File: MD5

package info (click to toggle)
r-cran-phylobase 0.8.6-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye, buster, sid
  • size: 1,308 kB
  • sloc: cpp: 306; ansic: 247; xml: 135; lisp: 38; sh: 9; makefile: 5
file content (144 lines) | stat: -rw-r--r-- 8,229 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
26d6762478b5eb57390494f7e3b83d68 *DESCRIPTION
337b64aee0f3909e58a5aecd495ae8b6 *NAMESPACE
853ba88e0acc5fee9cf397167b9d615d *NEWS.md
5d7d5aaeacdcbb2b7c94e2a7a12c8283 *R/MRCA-methods.R
2d357445e1f4da60a9e24e6b0a4a91af *R/RcppExports.R
ee8ad14745e24da2f0ab9ce624116e73 *R/addData-methods.R
49fe0b7f358f2de48dd43bec31efe4c5 *R/ancestors.R
f60e16beb8a5551c2c08e486d963c2a7 *R/checkdata.R
cf200a46cf69d04f04f6b31c80c75bb1 *R/edgeLength-methods.R
9edcd964c68d44867b019abe4105f093 *R/extractTree.R
ad9a4f02a254be9bb954601faa4f58c8 *R/formatData.R
c91b1a7bbcea7047e0370985bbcf4d44 *R/getNode-methods.R
182ac8ec6285e37b88a9da9c7e1106fa *R/internal-constructors.R
7bd80915399baa2675528dfed8b193e1 *R/labels-methods.R
cb2282bb40632e8f7039991482938d11 *R/multiphylo4-class.R
97bef8bb049e23553a30e9c00f07d6f5 *R/nodeId-methods.R
c0e2782404632e4e3420ac9520a7eb67 *R/oldclasses-class.R
016336404f44444178d488798ae5607c *R/pdata.R
871f687a6a4c9e2b3ca3c7ce787dcc4a *R/phylo4-accessors.R
4bebc32d3934dce824c054b0ce549be3 *R/phylo4-class.R
be1814a94cc3b26b66451f236b67cedc *R/phylo4-methods.R
3a740fa03aa3940f253b321e006fa157 *R/phylo4d-accessors.R
d28d5cb63f628bc8cf032d226857ceb1 *R/phylo4d-class.R
2c8a0217d8812d1e3702aa5cee53ae82 *R/phylo4d-methods.R
c17a24025b57f3e24a4841404757d161 *R/phylobase-package.R
6cfe1b8f4fa6b546480b9b0917e8884b *R/phylobase.options.R
0c1561e5ae25e50f5811a863450a878e *R/phylomats-class.R
97b55e8896ba2f87877ee9ee1a81a54a *R/print-methods.R
3c625fbec9acfd9826bf6a58c49f3da1 *R/readNCL.R
712c2b4cfcce97c593cdebd36a846c87 *R/reorder-methods.R
af36b2ab79cdce9ab7f1c51b99a9120c *R/root-methods.R
874083ceb7ff2a63d4e31e2dfa9b3f6f *R/setAs-methods.R
b12e60d130b8617e92ece7cd5e2faa08 *R/shortestPath-methods.R
d566204cf9829a745739412ce5887963 *R/subset-methods.R
ddb1f86ef610780a336bdf7473b1cb69 *R/summary-methods.R
957d6bb59eea50e691c3411bd7c8a455 *R/tbind.R
54333801e92f6320240187986cf19887 *R/tdata-methods.R
68957c0049faa23c0634abb04bc1b4af *R/treePlot.R
a3451a2d297b035ecf6561a4fdb3ae28 *R/treestruc.R
38747d50f18ac2b910afecf24ed1d92c *R/zzz.R
6d742b0807a36f3631995be307dd9db0 *build/vignette.rds
7a03af7f836f7bff48f5b9dc83b28ca8 *data/geospiza.rda
8a843dd8cd966030b246f06adee0ac13 *data/geospiza_raw.rda
26e3cdf5f9480147fd9ef4a3f8b75c3b *data/owls4.rda
a7c04f77c4e9ddd2a430207cbaea7281 *inst/doc/phylobase.Rnw
32fd3e8863afe4368cfbfb4f1df3effa *inst/doc/phylobase.pdf
7cfba1e69724dd93fe4a07525e419ed4 *inst/nexmlfiles/comp_analysis.xml
1fff9fa62be103e818e88abf156ffacb *inst/nexusfiles/ExContData.Rdata
c05860e96ba5feab12b1269f43a43f1b *inst/nexusfiles/MultiLineTrees.nex
a9a55d0e542ea83751c134892a17440f *inst/nexusfiles/NastyLabels.nex
72b184a406aa23c2e1711df4f3fd0275 *inst/nexusfiles/NastyLabels2.nex
f8225a526530eabfaa8ea117e2a82aae *inst/nexusfiles/co1.nex
f0289cdad66a374a438f582e2ab76a29 *inst/nexusfiles/minNex.nex
f77c8d44a525dbb3b06c335110ad3547 *inst/nexusfiles/minSeq.nex
4d5d4d71cf83b54eed9811470482e8d2 *inst/nexusfiles/newick.tre
51849f725c9b6097be5f2b6453c33844 *inst/nexusfiles/noStateLabels.nex
9fec41c9d01e57b43dc8e55f1547096b *inst/nexusfiles/shorebird_underscore.nex
d7eeca6e30d22f9a431822452109e922 *inst/nexusfiles/testSubsetTaxa.nex
ee3bac96ca12af01b3c7610df8339f34 *inst/nexusfiles/test_min.nex
8c16a312ee724e2a94aecd5b2c6df0ee *inst/nexusfiles/treeRoundingError.nex
99b2fe340a17a7e8cac9cfb9bdbafe70 *inst/nexusfiles/treeWithContinuousData.nex
9d27abaf6517ea4ca9881bd9f8c0032a *inst/nexusfiles/treeWithDiscAndContData.nex
963e6a5568b7fae9291232b8abfd496c *inst/nexusfiles/treeWithDiscreteData.nex
6deabaca8bbfe8c34e60d06349f31398 *inst/nexusfiles/treeWithPolyExcludedData.nex
b6390d9653d37f920612cbe3a8d38fe5 *inst/nexusfiles/treeWithSpecialCharacters.nex
4961bb5af89e1cfd63944af5d8ee8408 *inst/nexusfiles/treeWithUnderscoreLabels.nex
4fe0019675f205b3f5f2f535870769a8 *man/MRCA.Rd
8d3d86994b11dc04f89872511dd83ace *man/addData-methods.Rd
d1eb853f8b1fc5b42a0a3a26549e0756 *man/ancestors.Rd
9fca101e88ff5addffa7a211bc8d0e39 *man/checkPhylo4.Rd
015c345a17837f3bf87c41bad4cf6420 *man/edgeLength-methods.Rd
76750a52c8492b23eb5509f4f8fa729a *man/edges-accessors.Rd
c5ff6259f85ca20555d80f07116c0e4e *man/extractTree.Rd
e790d3874ddcda5c6521d700b797d814 *man/formatData.Rd
3964c17050f1ae365332e0a176156cc4 *man/geospiza.Rd
a37a84b3cab4fd52a180a7b76310e503 *man/getNode-methods.Rd
1d0a888a405794b2a7fa33621c7b0726 *man/labels-methods.Rd
6519db726c64b47e02cab2424c39a647 *man/multiPhylo-class.Rd
b976ab5ef7d5d9d0a348ef16019820c3 *man/nTips-methods.Rd
5f5619026f03eb92dc7c5a76410ce13a *man/nodeId-methods.Rd
a613eca88be01b8b404487661f041c8e *man/owls4.Rd
d07a2bf017b1d937cdbec916190127b1 *man/pdata-class.Rd
d88a1ee35365662fbeb5dbe4efe6bde3 *man/pdata.Rd
375b27916734c02363a64ee7c8dba307 *man/phylo4-class.Rd
691582be9ad3f0ef329b7c5abad71c0c *man/phylo4-methods.Rd
27cc410eb347b2f7b56d4c144004a383 *man/phylo4d-accessors.Rd
73b3b7b79cd7bc62c7e9d60a49642256 *man/phylo4d-class.Rd
02e448fb3fbfab2f134fed86c712f0d9 *man/phylo4d-methods.Rd
ccb481d77f91417f5a2ff91a53a0670a *man/phyloXXYY.Rd
439961decd10191d8961540d9c4fb776 *man/phylobase-package.Rd
32b2159b920d7397b804da4944625b3c *man/phylobase.options.Rd
329398a7a65262cbaa6598496a44ae74 *man/phylobubbles.Rd
7d5119552a6eb8f7531e246cfaa64535 *man/phylomat-class.Rd
27a7f38e8cfcf7433bd1bad67929beab *man/plotOneTree.Rd
fb84e8cd95ad2561af081a69dc4794ce *man/print-methods.Rd
e0085a05d8d50f8e6aa2b571d4dd4ae8 *man/readNexus.Rd
b8bac1e95bc7e7ee47077875704aa7be *man/reorder-methods.Rd
63c94c453c9202600ddc58de6568d793 *man/root-methods.Rd
5f16f493fdcfb4f7c3d9228b91f2a368 *man/setAs-methods.Rd
366c27b381f7c07f2a1498f18fee04eb *man/shortestPath-methods.Rd
31e45659a09b32a9226e1d2c00a6b93b *man/subset-methods.Rd
d94fdf7044af2b4852dfd0dd84af84c0 *man/summary-methods.Rd
cf2ece9ac058f7906ac4447ce44faa65 *man/tdata-methods.Rd
75d0b2fc6fd10b94e66cbb4676e71705 *man/tip.data.plot.Rd
28a56a8a9ac444d7dcda31758bb33ad3 *man/treePlot-methods.Rd
15201a7ee192e8a55b9cca1bd9093e7c *man/treeStructure-methods.Rd
ed0d19722e28a7d316256f2c247be33e *src/Makevars
1e0cc7f2ea27756865f63d6758ca90a8 *src/Makevars.win
a81e1490b4e64835c20a52bfd48c8171 *src/RcppExports.cpp
2ba5b488a78a904712cdefc6f87307f9 *src/ancestors.c
c78cc56ae6c035ed9a0a584424eac960 *src/checkPhylo4.cpp
4b08d7daaf385bd79465aa3e0785967e *src/descendants.c
1b1d0ecd28d6eb26a29fc576091cc5c3 *src/phyloXX.c
eaca9d3295c37dd10cfe242678bac37b *src/phylobase_init.c
dc5efccf4d370c4c7b0801bcbfd74a9b *src/reorderBinary.c
1944dc3ac77930043bb7ccb02f3718cd *src/reorderRobust.c
cb2ef3c2e0613221c053e3236b36debd *tests/misctests.R
9f8cda1294f43f665a0a96aa7b7f7977 *tests/phylo4dtests.R
fd985e3b18ff2d41e3c213f8b9418f27 *tests/phylosubtest.R
db2a0aaf0280429619fb99b2855c835e *tests/phylotorture.R
647bb8fbf0e8266427210598fc3fd21a *tests/plottest.R
c08c45b2d046fc6386a34c9fe78aea51 *tests/roundtrip.R
ab01639d84fb8c735c4b80404a16e621 *tests/test-all.R
38c287fa7b4426eab00c31412ff770be *tests/testprune.R
8c24f793e3f704b87d3eb84e30dfac52 *tests/testthat/test.checkdata.R
c668499d76ffe8fad700cb13aa59d362 *tests/testthat/test.class-phylo4.R
23e084f6bb928abf1864cb67cd0c078e *tests/testthat/test.class-phylo4d.R
7bfa9a811172037df31773779b89cdef *tests/testthat/test.formatData.R
1275c5c4b612317ed4e6c9f1a7e8eb15 *tests/testthat/test.methods-oldclasses.R
fb3c95bcfb9297e8a1ec897e3db1ffce *tests/testthat/test.methods-phylo4.R
9dd09d9e64303c752ed57a7331543854 *tests/testthat/test.pdata.R
e4d54b4db45a69a5e40811975cc44274 *tests/testthat/test.phylo4.R
d38fa9feddccd722b1c56a4864dbfc9e *tests/testthat/test.phylobase.options.R
e1d0fada9b7ed61564f9fb1570d02f4f *tests/testthat/test.prune.R
7a7050ade501c998d593f5be3be6d8ce *tests/testthat/test.readNCL.R
e29d3170f506dc31551e611b5dc60600 *tests/testthat/test.setAs-Methods.R
37b1df7381866235003e027eff81e2c7 *tests/testthat/test.subset.R
7ce9e14f01d0b524e56ec238d90275e0 *tests/testthat/test.tbind.R
3286fe80846d087c46a36fcf380e42a7 *tests/testthat/test.treePlot.R
7020fbe04de6da74f575a83039235325 *tests/testthat/test.treestruc.R
521ece6dcb763bcbfd39c327fff884e2 *tests/testthat/test.treewalk.R
f3f850c2fd5df4c58e5802d2e8ad01b5 *vignettes/auto/developer.el
58df4009f4e2c780dc5bcc1324f31bf4 *vignettes/auto/phylobase.el
a7c04f77c4e9ddd2a430207cbaea7281 *vignettes/phylobase.Rnw