1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
|
\name{strahlerNumber}
\alias{strahlerNumber}
\alias{extract.strahlerNumber}
\title{Computes Strahler number for trees and nodes}
\usage{
strahlerNumber(tree, plot=TRUE)
extract.strahlerNumber(tree, i, plot=TRUE)
}
\arguments{
\item{tree}{an object of class \code{"phylo"}.}
\item{i}{order of Strahler number to extract for \code{extract.strahlerNumber}.}
\item{plot}{logical value indicating whether to plot the tree with Strahler numbers for node labels.}
}
\description{
The function \code{strahlerNumber} computes the Strahler number of all nodes and tips in the tree. For more information about Strahler numbers see \url{http://en.wikipedia.org/wiki/Strahler_number}. The function \code{extract.strahlerNumber} extracts all of the most inclusive clades of Strahler number \code{i}.
}
\value{
Either a vector with the Strahler number for each tip and internal node; or (for \code{extract.strahlerNumber} the set of (most inclusive) subtrees with Strahler number \code{i} as an object of class \code{"multiPhylo"}.
}
\references{
Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). \emph{Methods Ecol. Evol.}, \bold{3}, 217-223.
}
\author{Liam Revell \email{liam.revell@umb.edu}}
\keyword{phylogenetics}
\keyword{utilities}
|
