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\name{reorderSimmap}
\alias{reorderSimmap}
\title{Reorder edges of a \code{"simmap"} tree}
\usage{
reorderSimmap(tree, order="cladewise", index.only=FALSE, ...)
}
\arguments{
\item{tree}{a modified object of class \code{"phylo"}.}
\item{order}{\code{"cladewise"}, \code{"pruningwise"}, or any other allowable order permitted by \code{\link[ape]{reorder.phylo}}.}
\item{index.only}{logical value indicating whether only an index should be returned.}
\item{...}{other arguments.}
}
\description{
Function returns a reordered modified \code{"phylo"} object by using \code{reorder.phylo} but then sorting the additional elements \code{$mapped.edge} and \code{$maps} to have the same order as \code{$edge}.
}
\value{
A modified object of class \code{"phylo"}.
}
\references{
Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). \emph{PeerJ}, \bold{12}, e16505.
}
\author{Liam Revell \email{liam.revell@umb.edu}}
\seealso{
\code{\link[ape]{reorder.phylo}}, \code{\link{plotSimmap}}
}
\keyword{phylogenetics}
\keyword{utilities}
\keyword{comparative method}
|
