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FROM rocker/tidyverse:latest
## consider removing build deps
RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get -yq install \
libxml2-dev \
libcurl4-openssl-dev \
libssl-dev \
git \
automake \
libtool \
gtk-doc-tools \
bison \
flex \
libgmp-dev \
libmhash-dev \
libgcrypt20-dev \
libpcre3-dev \
libv8-dev \
libjq-dev \
libpq-dev \
libdb-dev \
libsqlite3-dev \
libmariadbclient-dev \
librdf-storage-virtuoso \
virtuoso-server \
unixodbc-dev
RUN git clone git://github.com/dajobe/raptor.git && \
cd raptor && \
./autogen.sh && \
make && \
make install && \
cd .. && \
git clone git://github.com/dajobe/rasqal.git && \
cd rasqal && \
./autogen.sh && \
make && \
make install && \
cd .. && \
git clone git://github.com/dajobe/librdf.git && \
cd librdf && \
./autogen.sh && \
make && \
make install
RUN R -e "install.packages('remotes')" && \
R -e "remotes::install_github('ropensci/redland-bindings/R/redland')" && \
R -e "remotes::install_github('ropensci/rdflib', dep=TRUE)"
RUN echo '[Local Virtuoso]\
\nDriver=/usr/lib/x86_64-linux-gnu/odbc/virtodbc_r.so\
\nAddress=localhost:1111' >> /etc/odbc.ini
RUN mkdir -p /etc/services.d/virtuoso \
&& echo '#!/usr/bin/with-contenv bash \
\n exec virtuoso-t -c /etc/virtuoso-opensource-6.1/virtuoso.ini' \
> /etc/services.d/virtuoso/run
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