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#' Documentation for Python Objects
#'
#' @param object Object to print documentation for
#'
#' @export
py_help <- function(object) {
help <- py_capture_output(import_builtins()$help(object), type = "stdout")
tmp <- tempfile("py_help", fileext = ".txt")
writeLines(help, con = tmp)
file.show(tmp, title = paste("Python Help:", object$`__name__`), delete.file = TRUE)
}
#' Register help topics
#'
#' Register a set of help topics for dispatching from F1 help
#'
#' @param type Type (module or class)
#' @param topics Named list of topics
#'
#' @keywords internal
#' @export
register_help_topics <- function(type = c("module", "class"), topics) {
# pick the right environment for this type
type <- match.arg(type)
envir <- switch(type,
module = .module_help_topics,
class = .class_help_topics
)
# assign the list into the environment
for (name in names(topics))
assign(name, topics[[name]], envir = envir)
}
#' Provide help for Python objects
#'
#' This is an internal method to be used by front-ends which need to provide
#' help text / information for Python objects in different contexts.
#'
#' @keywords internal
#' @export
py_help_handler <- function(type = c("completion", "parameter", "url"),
topic,
source,
...)
{
help_handler(type, topic, source, ...)
}
# Generic help_handler returned from .DollarNames -- dispatches to various
# other help handler functions.
#
# NOTE: this routine is used by RStudio's autocompletion system
help_handler <- function(type = c("completion", "parameter", "url"),
topic,
source,
...)
{
type <- match.arg(type)
if (type == "completion") {
help_completion_handler.python.builtin.object(topic, source)
} else if (type == "parameter") {
help_completion_parameter_handler.python.builtin.object(source)
} else if (type == "url") {
help_url_handler.python.builtin.object(topic, source)
}
}
#' Register a help handler for a root Python module
#'
#' @param module Name of a root Python module
#' @param handler Handler function: `function(name, subtopic = NULL)`. The name
#' will be the fully qualified name of a Python object (module, function, or
#' class). The `subtopic` is optional and is currently used only for methods
#' within classes.
#'
#' @details The help handler is passed a fully qualified module, class, or
#' function name (and optional method for classes). It should return a URL for
#' a help page (or `""` if no help page is available).
#'
#' @keywords internal
#' @export
register_module_help_handler <- function(module, handler) {
.module_help_handlers[[module]] <- handler
}
# Extract docs in TensorFlow-like styles
help_completion_handler_default <- function(doc) {
arguments_matches <- regexpr(pattern = '\n(Arg(s|uments):)', doc)
if (arguments_matches[[1]] != -1)
description <- substring(doc, 1, arguments_matches[[1]])
else
description <- doc
# collect other sections
sections <- sections_from_doc(doc)
# try to get return info
returns <- sections$Returns
# remove arguments and returns
sections$Args <- NULL
sections$Arguments <- NULL
sections$Returns <- NULL
list(
description = description,
sections = sections,
returns = returns
)
}
# Extract docs in Sphinx style
help_completion_handler_sphinx <- function(doc) {
doctree <- sphinx_doctree_from_doc(doc)
returns <- gsub("Returns\n", "", doctree$ids$returns$astext(), fixed = TRUE)
# remove the additional space before ":" as it's Sphinx specific
returns <- gsub(" : ", ": ", returns, fixed = TRUE)
description <- substring(doc, 1, sphinx_doc_params_matches(doc)[[1]])
# extract sections other than parameters and returns
sections <- lapply(names(doctree$ids), function(name)
if (!name %in% c("parameters", "returns")) doctree$ids[[name]])
sections[sapply(sections, is.null)] <- NULL
list(
description = description,
sections = sections,
returns = returns
)
}
# Return help for display in the completion popup window
help_completion_handler.python.builtin.object <- function(topic, source) {
if (!py_available())
return(NULL)
# convert source to object if necessary
source <- source_as_object(source)
if (is.null(source))
return(NULL)
# check for property help
help <- import("rpytools.help")
doc <- help$get_property_doc(source, topic)
# check for standard help
if (is.null(doc)) {
inspect <- import("inspect")
doc <- inspect$getdoc(help_get_attribute(source, topic))
}
# default to no doc
if (is.null(doc))
doc <- ""
if (is_sphinx_doc(doc) && is_docutils_available()) {
extracted <- tryCatch(
help_completion_handler_sphinx(doc),
error = identity)
if (inherits(extracted, "error"))
extracted <- help_completion_handler_default(doc)
} else {
extracted <- help_completion_handler_default(doc)
}
description <- extracted$description
sections <- extracted$sections
returns <- extracted$returns
# extract description and details
matches <- regexpr(pattern ='\n', description, fixed=TRUE)
if (matches[[1]] != -1) {
details <- substring(description, matches[[1]] + 1)
description <- substring(description, 1, matches[[1]] - 1)
} else {
details <- ""
}
details <- cleanup_description(details)
description <- cleanup_description(description)
# try to generate a signature
signature <- NULL
target <- help_get_attribute(source, topic)
if (!is.null(target) && py_is_callable(target)) {
help <- import("rpytools.help")
signature <- help$generate_signature_for_function(target)
if (is.null(signature))
signature <- "()"
signature <- paste0(topic, signature)
}
# return docs
list(title = topic,
signature = signature,
returns = returns,
description = description,
details = details,
sections = sections)
}
# Return parameter help for display in the completion popup window
help_completion_parameter_handler.python.builtin.object <- function(source) {
if (!py_available())
return(NULL)
# split into topic and source
components <- source_components(source)
if (is.null(components))
return(NULL)
topic <- components$topic
source <- components$source
# get the function
target <- help_get_attribute(source, topic)
if (!is.null(target) & py_is_callable(target)) {
help <- import("rpytools.help")
args <- help$get_arguments(target)
if (!is.null(args)) {
# get the descriptions
doc <- help$get_doc(target)
arg_descriptions <- arg_descriptions_from_doc(args, doc)
return(list(
args = args,
arg_descriptions = arg_descriptions
))
}
}
# no parameter help found
NULL
}
# Handle requests for external (F1) help
help_url_handler.python.builtin.object <- function(topic, source) {
if (!py_available())
return(NULL)
# normalize topic and source for various calling scenarios
if (grepl(" = $", topic)) {
components <- source_components(source)
if (is.null(components))
return(NULL)
topic <- components$topic
source <- components$source
} else {
source <- source_as_object(source)
if (is.null(source))
return(NULL)
}
# get help page
page <- NULL
inspect <- import("inspect")
if (inspect$ismodule(source)) {
module <- py_get_name(source)
help <- module_help(module, topic)
} else {
help <- class_help(class(source), topic)
}
# return help (can be "")
help
}
# Handle requests for the list of arguments for a function
help_formals_handler.python.builtin.object <- function(topic, source) {
if (!py_available())
return(NULL)
# check for module proxy
if (py_is_module_proxy(source))
return(NULL)
# check for attribute
if (!py_has_attr(source, topic))
return(NULL)
target <- help_get_attribute(source, topic)
if (is.null(target) || !py_is_callable(target))
return(NULL)
# for builtin functions, we need to try parsing the help documentation
# (often, the first line provides a function signature)
if (inherits(target, "python.builtin.builtin_function_or_method")) {
output <- tryCatch({
docs <- py_get_attr(target, "__doc__")
if (is_py_object(docs))
docs <- py_to_r(docs)
pieces <- strsplit(docs, "\n", fixed = TRUE)[[1]]
first <- pieces[[1]]
munged <- paste(gsub("[^(]*[(]", "function (", first), "{}")
parsed <- parse(text = munged)[[1]]
list(
formals = names(parsed[[2]]),
helpHandler = "reticulate:::help_handler"
)
}, error = function(e) NULL)
return(output)
}
# otherwise, use rpytools
help <- import("rpytools.help")
args <- help$get_arguments(target)
if (is.null(args))
return(NULL)
list(
formals = args,
helpHandler = "reticulate:::help_handler"
)
}
sphinx_doc_params_matches <- function(doc) {
regexpr(pattern = "\nParameters\n+[-]+", doc)
}
is_sphinx_doc <- function(doc) {
sphinx_doc_params_matches(doc)[[1]] != -1
}
is_docutils_available <- function() {
py_module_available("docutils")
}
sphinx_doctree_from_doc <- function(doc) {
docutils <- import("docutils")
py_capture_output(
doctree <- docutils$core$publish_doctree(doc)
)
doctree
}
# Extract arguments descriptions for docs in TensorFlow-like styles
arg_descriptions_from_doc_default <- function(args, doc) {
# extract arguments section of the doc and break into lines
arguments <- section_from_doc('Arg(s|uments)', doc)
doc <- strsplit(doc, "\n", fixed = TRUE)[[1]]
sapply(args, function(arg) {
arg_line <- which(grepl(paste0("^\\s+", arg, ":"), doc))
if (length(arg_line) > 0) {
line <- doc[[arg_line]]
arg_description <- substring(line, regexpr(':', line)[[1]] + 1)
next_line <- arg_line + 1
while((arg_line + 1) <= length(doc)) {
line <- doc[[arg_line + 1]]
if (!grepl("^\\s*$", line) && !grepl("^\\s+\\w+: ", line)) {
arg_description <- paste(arg_description, line)
arg_line <- arg_line + 1
}
else
break
}
arg_description <- cleanup_description(arg_description)
} else {
arg
}
})
}
# Extract arguments descriptions for docs in Sphinx style
arg_descriptions_from_doc_sphinx <- function(doc) {
doctree <- sphinx_doctree_from_doc(doc)
params <- doctree$ids$parameters$children[[2]]$children
text <- vapply(params, function(param) {
param$children[[3]]$astext()
}, character(1))
nm <- vapply(params, function(param) {
param$children[[1]]$astext()
}, character(1))
names(text) <- nm
text
}
# Extract argument descriptions from python docstring
arg_descriptions_from_doc <- function(args, doc) {
if (is.null(doc)) {
arg_descriptions <- args
} else if (is_sphinx_doc(doc) && is_docutils_available()) {
arg_descriptions <- tryCatch(
arg_descriptions_from_doc_sphinx(doc),
error = identity)
if (inherits(arg_descriptions, "error"))
arg_descriptions <- arg_descriptions_from_doc_default(args, doc)
} else {
arg_descriptions <- arg_descriptions_from_doc_default(args, doc)
}
arg_descriptions
}
# Extract all sections from the doc
sections_from_doc <- function(doc) {
# sections to return
sections <- list()
# grab section headers
doc <- strsplit(doc, "\n", fixed = TRUE)[[1]]
section_lines <- which(grepl("^\\w(\\w|\\s)+:", doc))
# for each section
for (i in section_lines) {
# get the section line and name
section_line <- i
section_name <- gsub(":\\s*$", "", doc[[i]])
# collect the sections text
section_text <- c()
while((section_line + 1) <= length(doc)) {
line <- doc[[section_line + 1]]
if (grepl("\\w+", line)) {
section_text <- paste(section_text, line)
section_line <- section_line + 1
}
else
break
}
# add to our list
sections[[section_name]] <- cleanup_description(section_text)
}
# return the sections
sections
}
# Extract section from doc
section_from_doc <- function(name, doc) {
section <- ""
doc <- strsplit(doc, "\n", fixed = TRUE)[[1]]
line_index <- which(grepl(paste0("^", name, ":"), doc))
if (length(line_index) > 0) {
while((line_index + 1) <= length(doc)) {
line <- doc[[line_index + 1]]
if (grepl("\\w+", line)) {
section <- paste(section, line)
line_index <- line_index + 1
}
else
break
}
}
cleanup_description(section)
}
# Convert types in description
cleanup_description <- function(description) {
if (is.null(description)) {
NULL
} else {
# remove leading and trailing whitespace
description <- gsub("^\\s+|\\s+$", "", description)
# convert 2+ whitespace to 1 ws
description <- gsub("(\\s\\s+)", " ", description)
# convert literals
description <- gsub("None", "NULL", description)
description <- gsub("True", "TRUE", description)
description <- gsub("False", "FALSE", description)
# convert tuple to list
description <- gsub("tuple", "list", description)
description <- gsub("list/list", "list", description)
description
}
}
# Convert source to object if necessary
source_as_object <- function(source) {
if (is.character(source)) {
source <- tryCatch(eval(parse(text = source), envir = globalenv()),
error = function(e) NULL)
if (is.null(source))
return(NULL)
}
source
}
# Split source string into source and topic
source_components <- function(source) {
components <- strsplit(source, "\\$")[[1]]
topic <- components[[length(components)]]
source <- paste(components[1:(length(components)-1)], collapse = "$")
source <- source_as_object(source)
if (!is.null(source))
list(topic = topic, source = source)
else
NULL
}
module_help <- function(module, topic) {
# do we have a page for this module/topic?
lookup <- paste(module, topic, sep = ".")
page <- .module_help_topics[[lookup]]
# if so then append topic and return
if (!is.null(page))
return(paste(page, topic, sep = "#"))
# do we have a module handler
main_module <- strsplit(module, ".", fixed = TRUE)[[1]][[1]]
handler <- .module_help_handlers[[main_module]]
if (!is.null(handler))
handler(lookup)
else
""
}
class_help <- function(class, topic) {
# call recursively for more than one class
if (length(class) > 1) {
# call for each class
for (i in 1:length(class)) {
help <- class_help(class[[i]], topic)
if (nzchar(help))
return(help)
}
# no help found
return("")
}
# do we have a page for this class?
page <- .class_help_topics[[class]]
# if so then append class and topic and return
if (!is.null(page)) {
components <- strsplit(class, ".", fixed = TRUE)[[1]]
class <- components[[length(components)]]
return(paste0(page, "#", class, ".", topic))
}
# do we have a handler for this module
main_module <- strsplit(class, ".", fixed = TRUE)[[1]][[1]]
handler <- .module_help_handlers[[main_module]]
if (!is.null(handler))
handler(class, topic)
else
""
}
help_get_attribute <- function(source, topic) {
# check for module proxy
if (py_is_module_proxy(source))
return(NULL)
# check for sub-module
if (py_is_module(source) && !py_has_attr(source, topic)) {
module <- py_get_submodule(source, topic)
if (!is.null(module))
return(module)
}
# get attribute w/ no warnings or errors
tryCatch(py_suppress_warnings(py_get_attr(source, topic)),
error = clear_error_handler(NULL))
}
# Environments where we store help topics (mappings of module/class name to URL)
.module_help_topics <- new.env(parent = emptyenv())
.class_help_topics <- new.env(parent = emptyenv())
.module_help_handlers <- new.env(parent = emptyenv())
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