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#' Run a Python REPL
#'
#' This function provides a Python REPL in the \R session, which can be used
#' to interactively run Python code. All code executed within the REPL is
#' run within the Python main module, and any generated Python objects will
#' persist in the Python session after the REPL is detached.
#'
#' When working with R and Python scripts interactively, one can activate
#' the Python REPL with `repl_python()`, run Python code, and later run `exit`
#' to return to the \R console.
#'
#' @param module An (optional) Python module to be imported before
#' the REPL is launched.
#'
#' @param quiet Boolean; print a startup banner when launching the REPL? If
#' `TRUE`, the banner will be suppressed.
#'
#' @param input Python code to be run within the REPL. Setting this can be
#' useful if you'd like to drive the Python REPL programmatically.
#'
#' @seealso [py], for accessing objects created using the Python REPL.
#'
#' @section Magics: A handful of magics are supported in `repl_python()`:
#'
#' Lines prefixed with `!` are executed as system commands:
#' - `!cmd --arg1 --arg2`: Execute arbitrary system commands
#'
#' Magics start with a `%` prefix. Supported magics include:
#' - `%conda ...` executes a conda command in the active conda environment
#' - `%pip ...` executes pip for the active python.
#' - `%load`, `%loadpy`, `%run` executes a python file.
#' - `%system`, `!!` executes a system command and capture output
#' - `%env`: read current environment variables.
#' - `%env name`: read environment variable 'name'.
#' - `%env name=val`, `%env name val`: set environment variable 'name' to 'val'.
#' `val` elements in `{}` are interpolated using f-strings (required Python >= 3.6).
#' - `%cd <dir>` change working directory.
#' - `%cd -`: change to previous working directory (as set by `%cd`).
#' - `%cd -3`: change to 3rd most recent working directory (as set by `%cd`).
#' - `%cd -foo/bar`: change to most recent working directory matching `"foo/bar"` regex
#' (in history of directories set via `%cd`).
#' - `%pwd`: print current working directory.
#' - `%dhist`: print working directory history.
#'
#' Additionally, the output of system commands can be captured in a variable, e.g.:
#' - `x = !ls`
#'
#' where `x` will be a list of strings, consisting of
#' stdout output split in `"\n"` (stderr is not captured).
#'
#'
#' @section Example:
#' ````
#'
#' # enter the Python REPL, create a dictionary, and exit
#' repl_python()
#' dictionary = {'alpha': 1, 'beta': 2}
#' exit
#'
#' # access the created dictionary from R
#' py$dictionary
#' # $alpha
#' # [1] 1
#' #
#' # $beta
#' # [1] 2
#'
#' ````
#'
#' @importFrom utils packageVersion
#' @export
repl_python <- function(
module = NULL,
quiet = getOption("reticulate.repl.quiet", default = FALSE),
input = NULL)
{
# load module if requested
if (is.character(module))
import(module)
# run hooks for initialize, teardown
initialize <- getOption("reticulate.repl.initialize")
if (is.function(initialize)) {
initialize()
}
teardown <- getOption("reticulate.repl.teardown")
if (is.function(teardown)) {
on.exit(teardown(), add = TRUE)
}
ensure_python_initialized()
if (is_positron() &&
exists(".ps.reticulate_open", inherits = TRUE)) {
eval(call(".ps.reticulate_open", input))
# TODO: seems we need to rerun py_inject_r(), possibly other init hooks.
# TODO: kernal initializion drops pre-existing objects in __main__
return(invisible())
}
# split provided code on newlines
if (!is.null(input))
input <- unlist(strsplit(input, "\n", fixed = TRUE))
# import other required modules for the REPL
sys <- import("sys", convert = TRUE)
codeop <- import("codeop", convert = TRUE)
# check to see if the current environment supports history
# (check for case where working directory not writable)
use_history <-
!"--vanilla" %in% commandArgs() &&
!"--no-save" %in% commandArgs() &&
!is.null(getwd()) &&
tryCatch(
{ utils::savehistory(tempfile()); TRUE },
error = function(e) FALSE
)
if (use_history) {
# if we have history, save and then restore the current
# R history
utils::savehistory()
on.exit(utils::loadhistory(), add = TRUE)
# file to be used for command history during session
histfile <- getOption("reticulate.repl.histfile")
if (is.null(histfile))
histfile <- file.path(tempdir(), ".reticulatehistory")
# load history (create empty file if none exists yet)
if (!file.exists(histfile))
file.create(histfile)
utils::loadhistory(histfile)
}
# buffer of pending console input (we don't evaluate code
# until the user has submitted a complete Python statement)
#
# we return an environment of functions bound in a local environment
# so that hook can manipulate the buffer if required
buffer <- stack(mode = "character")
# command compiler (used to check if we've received a complete piece
# of Python input)
compiler <- codeop$CommandCompiler()
# record whether the used has requested a quit
quit_requested <- FALSE
# inform others that the reticulate REPL is active
.globals$py_repl_active <- TRUE
on.exit(.globals$py_repl_active <- FALSE, add = TRUE)
# handle errors produced during REPL actions
handle_error <- function(output) {
failed <- inherits(output, "error")
if (failed) {
error_message <- py_last_error()$message
if (identical(.Platform$GUI, "RStudio") &&
requireNamespace("cli", quietly = TRUE))
error_message <- make_filepaths_clickable(error_message)
message(error_message, appendLF = !endsWith(error_message, "\n"))
}
failed
}
handle_interrupt <- function(condition) {
# swallow interrupts -- don't allow interrupted Python code to
# exit the REPL; we should only exit when an interrupt is sent
# when no Python code is executing
}
repl <- function() {
# flush stdout, stderr on each REPL iteration
on.exit(py_flush_output(), add = TRUE)
# read input (either from user or from code)
prompt <- if (buffer$empty()) ">>> " else "... "
if (is.null(input)) {
contents <- readline(prompt = prompt)
} else if (length(input)) {
contents <- input[[1L]]
input <<- tail(input, n = -1L)
writeLines(paste(prompt, contents), con = stdout())
} else {
quit_requested <<- TRUE
return()
}
# NULL implies the user sent EOF -- time to leave
if (is.null(contents)) {
writeLines("exit", con = stdout())
quit_requested <<- TRUE
return()
}
# trim whitespace for handling of special commands
trimmed <- gsub("^\\s*|\\s*$", "", contents)
# run hook provided by front-end (in case special actions
# need to be taken in response to console input)
hook <- getOption("reticulate.repl.hook")
if (is.function(hook)) {
status <- tryCatch(hook(buffer, contents, trimmed), error = identity)
# report errors to the user
if (inherits(status, "error")) {
message(paste("Error:", conditionMessage(status)))
return()
}
# a TRUE return implies the hook handled this input
if (isTRUE(status))
return()
}
# run hook provided by front-end, to notify that we're now busy
hook <- getOption("reticulate.repl.busy")
if (is.function(hook)) {
# run once now to indicate we're about to run
status <- tryCatch(hook(TRUE), error = identity)
if (inherits(status, "error"))
warning(status)
# run again on exit to indicate we're done
on.exit({
status <- tryCatch(hook(FALSE), error = identity)
if (inherits(status, "error"))
warning(status)
}, add = TRUE)
}
# special handling for top-level commands (when buffer is empty)
if (buffer$empty()) {
# handle user requests to quit
if (trimmed %in% c("quit", "exit", "quit()", "exit()")) {
quit_requested <<- TRUE
return()
}
# special handling for help requests prefixed with '?'
if (regexpr("?", trimmed, fixed = TRUE) == 1) {
code <- sprintf("help(\"%s\")", substring(trimmed, 2))
py_run_string(code)
return()
}
# similar handling for help requests postfixed with '?'
if (grepl("(^[\\#].*)[?]\\s*$", trimmed, perl = TRUE)) {
replaced <- sub("[?]\\s*$", "", trimmed)
code <- sprintf("help(\"%s\")", replaced)
py_run_string(code)
return()
}
if (getOption("reticulate.repl.use_magics", TRUE)) {
# expand any "!!" as system commands that capture output
trimmed <- gsub("!!", "%system ", trimmed)
# user intends to capture output from system command in var
# e.g.: x = !ls
if (grepl("^[[:alnum:]_.]\\s*=\\s*!", trimmed))
trimmed <- sub("=\\s*!", "= %system ", trimmed)
# magic
if (grepl("^%", trimmed)) {
py$`_` <- .globals$py_last_value <- invoke_magic(trimmed)
return()
}
# system
if (grepl("^!", trimmed)) {
system(str_drop_prefix(trimmed, "!"))
return()
}
# capture output from magic command in var
# # e.g.: x = %env USER
if (grepl("^[[:alnum:]_.]\\s*=\\s*%", trimmed)) {
s <- str_split1_on_first(trimmed, "\\s*=\\s*")
target <- s[[1]]
magic <- str_drop_prefix(s[2L], "%")
py$`_` <- .globals$py_last_value <- invoke_magic(magic)
py_run_string(sprintf("%s = _", target), local = FALSE, convert = FALSE)
return()
}
}
# if the user submitted a blank line at the top level,
# ignore it (note that we intentionally submit whitespace-only
# lines that might terminate a block)
if (!nzchar(trimmed))
return()
}
# update history file
if (use_history)
cat(contents, file = histfile, sep = "\n", append = TRUE)
# trim whitespace if the buffer is empty (this effectively allows leading
# whitespace in top-level Python commands)
if (buffer$empty()) contents <- trimmed
# update buffer
previous <- buffer$data()
buffer$push(contents)
# generate code to be sent to command interpreter
code <- paste(buffer$data(), collapse = "\n")
ready <- tryCatch(compiler(code), condition = identity)
# a NULL return implies that we can accept more input
if (is.null(ready))
return()
# on error, attempt to submit the previous buffer and then handle
# the newest line of code independently. this allows us to handle
# python constructs such as:
#
# def foo():
# return 42
# foo()
#
# try:
# print 1
# except:
# print 2
# print 3
#
# which would otherwise fail
if (length(previous) && inherits(ready, "error")) {
# submit previous code
pasted <- paste(previous, collapse = "\n")
tryCatch(
py_compile_eval(pasted, capture = FALSE),
error = handle_error,
interrupt = handle_interrupt
)
# now, handle the newest line of code submitted
buffer$set(contents)
code <- contents
ready <- tryCatch(compiler(code), condition = identity)
# a NULL return implies that we can accept more input
if (is.null(ready))
return()
}
# otherwise, we should have received a code output object
# so we can just run the code submitted thus far
buffer$clear()
tryCatch(
py_compile_eval(code, capture = FALSE),
error = handle_error,
interrupt = handle_interrupt
)
}
# notify the user we're entering the REPL (when requested)
if (!quiet) {
version <- paste(
sys$version_info$major,
sys$version_info$minor,
sys$version_info$micro,
sep = "."
)
# NOTE: we used to use sys.executable but that would report
# the R process rather than the Python process
config <- py_config()
executable <- config$python
fmt <- c(
"Python %s (%s)",
"Reticulate %s REPL -- A Python interpreter in R.",
"Enter 'exit' or 'quit' to exit the REPL and return to R."
)
msg <- sprintf(
paste(fmt, collapse = "\n"),
version,
executable,
utils::packageVersion("reticulate")
)
message(msg)
}
# enter the REPL loop
repeat {
if (quit_requested)
break
tryCatch(repl(), interrupt = identity)
}
}
# Check Whether the Python REPL is Active
#
# Check to see whether the Python REPL is active. This is primarily
# for use by R front-ends, which might want to toggle or affect
# the state of the Python REPL while it is running.
py_repl_active <- function() {
.globals$py_repl_active
}
invoke_magic <- function(command) {
stopifnot(is.character(command), length(command) == 1)
command <- str_drop_prefix(command, "%")
m <- str_split1_on_first(command, "\\s+")
cmd <- m[1]
args <- m[-1]
if (cmd == "pwd") {
if (length(args))
stop("%pwd magic takes no arguments, received: ", command)
dir <- getwd()
cat(dir, "\n")
return(invisible(dir))
}
# in IPython, this is stored in __main__._dh as a python list
# we avoid polluting `__main__` and also lazily create the history,
# also, this can only track changes made from `repl_python()`.
get_dhist <- function() {
dh <- .globals$magics_state$wd_history
if (is.null(dh)) {
.globals$magics_state <- new.env(parent = emptyenv())
dh <- import("collections")$deque(list(getwd()), 200L)
.globals$magics_state$wd_history <- dh
}
dh
}
if (cmd == "cd") {
hist <- get_dhist()
if (length(args) != 1)
stop("%cd magic takes 1 argument, received: ", command)
dir <- gsub("[\"']", "", args)
# strings auto complete as fs locations in RStudio IDE, so as a convenience
# we accept quoted file paths and unquote them here.
setwd2 <- function(dir) {
old_wd <- setwd(dir)
new_wd <- getwd()
cat(new_wd, "\n", sep = "")
hist$append(new_wd)
invisible(old_wd)
}
if (startsWith(args, "-")) {
if (args == "-") {
dir <- hist[-2L]
} else if (grepl("-[0-9]+$", args)) {
dir <- hist[as.integer(args)]
} else {
# partial matching by regex
hist <- import_builtins()$list(hist)
re <- str_drop_prefix(args, "-")
if (is_windows())
re <- gsub("[/]", "\\", re, fixed = TRUE)
dir <- grep(re, hist, perl = TRUE, value = TRUE)
if (!length(dir))
stop("No matching directory found in history for ", dQuote(re), ".",
"\nSee history with %dhist")
dir <- dir[[length(dir)]] # pick most recent match
}
# not implemented, -b bookmarks, -q quiet
} else
dir <- args
return(setwd2(dir))
}
if (cmd == "dhist") {
hist <- get_dhist()
hist <- import_builtins()$list(hist)
cat("Directory history:\n- ")
cat(hist, sep = "\n- ")
cat("\n")
return(invisible(hist))
}
if (cmd == "conda") {
info <- get_python_conda_info(py_exe())
return(conda_run2(cmd_line = paste("conda", args),
conda = info$conda,
envname = info$root))
}
if (cmd == "pip") {
if (is_conda_python(py_exe())) {
info <- get_python_conda_info(py_exe())
return(conda_run2(cmd_line = paste("pip", args),
conda = info$conda,
envname = info$root))
} else {
args <- shQuote(strsplit(args, "\\s+")[[1]])
system2(py_exe(), c("-m", "pip", args))
}
return()
}
if (cmd == "env") {
if (!length(args))
return(print(Sys.getenv()))
if (grepl("=|\\s", args)) # user setting var
args <- str_split1_on_first(args, "=|\\s+")
else {
print(val <- Sys.getenv(args))
return(val)
}
new_val <- args[[2]]
if (grepl("\\{.*\\}", new_val) && py_version() >= "3.6") {
#interpolate as f-strings
new_val <- py_eval(sprintf('f"%s"', new_val))
}
names(new_val) <- args[[1]]
do.call(Sys.setenv, as.list(new_val))
cat(sprintf("env: %s=%s\n", names(new_val), new_val))
return(invisible(new_val))
# not implemented: bash-style $var expansion
}
if (cmd %in% c("load", "loadpy", "run")) {
# only supports sourcing a python file in __main__
# not implemented:
# -r line ranges, -s specific symbols,
# reexecution of symbols from history,
# reexecution of namespace objects annotated by ipython shell with original source
# ipython extensions
file <- gsub("[\"']", "", args)
if (!file.exists(file))
stop("Python file not found: ", file)
py_run_file(file, local = FALSE, convert = FALSE)
return()
}
if (cmd %in% c("system", "sx")) {
if (is_windows())
return(shell(args, intern = TRUE))
else
return(as.list(system(args, intern = TRUE)))
}
stop("Magic not implemented: ", command)
}
#' IPython console
#'
#' Launch IPython console app.
#'
#' See https://ipython.readthedocs.io/ for features.
#'
#' @keywords internal
ipython <- function() {
ensure_python_initialized("IPython")
# set flag for frontend
.globals$py_repl_active <- TRUE
on.exit({
.globals$py_repl_active <- FALSE
}, add = TRUE)
# don't pollute R history w/ python commands
# (IPython keeps track of it's own history)
use_history <-
!"--vanilla" %in% commandArgs() &&
!"--no-save" %in% commandArgs() &&
!is.null(getwd()) &&
tryCatch(
{ utils::savehistory(tempfile()); TRUE },
error = function(e) FALSE
)
if (use_history) {
# if we have history, save and then restore the current
# R history
utils::savehistory()
on.exit(utils::loadhistory(), add = TRUE)
}
# Not implemented,
# - custom startup banner
# RStudio IDE support for:
# - image display
# - composition of multi-line code blocks
import("rpytools.ipython")$start_ipython()
}
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