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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/get_slurm_out.R
\name{get_slurm_out}
\alias{get_slurm_out}
\title{Reads the output of a function calculated on the Slurm cluster}
\usage{
get_slurm_out(slr_job, outtype = "raw", wait = TRUE, ncores = NULL)
}
\arguments{
\item{slr_job}{A \code{slurm_job} object.}
\item{outtype}{Can be "table" or "raw", see "Value" below for details.}
\item{wait}{Specify whether to block until \code{slr_job} completes.}
\item{ncores}{(optional) If not null, the number of cores passed to
mclapply}
}
\value{
If \code{outtype = "table"}: A data frame with one column by
return value of the function passed to \code{slurm_apply}, where
each row is the output of the corresponding row in the params data frame
passed to \code{slurm_apply}.
If \code{outtype = "raw"}: A list where each element is the output
of the function passed to \code{slurm_apply} for the corresponding
row in the params data frame passed to \code{slurm_apply}.
}
\description{
This function reads all function output files (one by cluster node used) from
the specified Slurm job and returns the result in a single data frame
(if "table" format selected) or list (if "raw" format selected). It doesn't
record any messages (including warnings or errors) output to the R console
during the computation; these can be consulted by invoking
\code{\link{print_job_status}}.
}
\details{
The \code{outtype} option is only relevant for jobs submitted with
\code{slurm_apply}. Jobs sent with \code{slurm_call} only return a single
object, and setting \code{outtype = "table"} creates an error in that case.
}
\seealso{
\code{\link{slurm_apply}}, \code{\link{slurm_call}}
}
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