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/*
* Copyright (C) 1999-2002 The Omega Project for Statistical Computing
*
* This library is free software; you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public
* License as published by the Free Software Foundation; either
* version 2 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with this library; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
#include "RS-DBI.h"
#include <R_ext/RS.h>
/* TODO: monitor memory/object size consumption against S limits
* in $SHOME/include/options.h we find "max_memory". We then
* mem_size to make sure we're not bumping into problems.
* But, is mem_size() reliable? How should we do this?
*
* TODO: invoke user-specified generators
*
* TODO: Implement exception objects for each dbObject.
*/
static RS_DBI_manager *dbManager = NULL;
static int HANDLE_LENGTH(SEXP handle)
{
SEXP h = R_ExternalPtrProtected(handle);
if (TYPEOF(h) == VECSXP) h = VECTOR_ELT(h, 0);
return Rf_length(h);
}
Mgr_Handle
RS_DBI_allocManager(const char *drvName, Sint max_con,
Sint fetch_default_rec, Sint force_realloc)
{
/* Currently, the dbManager is a singleton (therefore we don't
* completly free all the space). Here we alloc space
* for the dbManager and return its mgrHandle. force_realloc
* means to re-allocate number of connections, etc. (in this case
* we require to have all connections closed). (Note that if we
* re-allocate, we don't re-set the counter, and thus we make sure
* we don't recycle connection Ids in a giver S/R session).
*/
Mgr_Handle mgrHandle;
RS_DBI_manager *mgr;
Sint counter;
Sint mgr_id = (Sint) getpid();
int i;
mgrHandle = RS_DBI_asMgrHandle(mgr_id);
if(!dbManager){ /* alloc for the first time */
counter = 0; /* connections handled so far */
mgr = (RS_DBI_manager*) malloc(sizeof(RS_DBI_manager));
}
else { /* we're re-entering */
if(dbManager->connections){ /* and mgr is valid */
if(!force_realloc)
return mgrHandle;
else
RS_DBI_freeManager(mgrHandle); /* i.e., free connection arrays*/
}
counter = dbManager->counter;
mgr = dbManager;
}
/* Ok, we're here to expand number of connections, etc.*/
if(!mgr)
RS_DBI_errorMessage("could not malloc the dbManger", RS_DBI_ERROR);
mgr->drvName = RS_DBI_copyString(drvName);
mgr->drvData = (void *) NULL;
mgr->managerId = mgr_id;
mgr->connections = (RS_DBI_connection **)
calloc((size_t) max_con, sizeof(RS_DBI_connection));
if(!mgr->connections){
free(mgr);
RS_DBI_errorMessage("could not calloc RS_DBI_connections", RS_DBI_ERROR);
}
mgr->connectionIds = (Sint *) calloc((size_t)max_con, sizeof(Sint));
if(!mgr->connectionIds){
free(mgr->connections);
free(mgr);
RS_DBI_errorMessage("could not calloc vector of connection Ids",
RS_DBI_ERROR);
}
mgr->counter = counter;
mgr->length = max_con;
mgr->num_con = (Sint) 0;
mgr->fetch_default_rec = fetch_default_rec;
for(i=0; i < max_con; i++){
mgr->connectionIds[i] = -1;
mgr->connections[i] = (RS_DBI_connection *) NULL;
}
dbManager = mgr;
return mgrHandle;
}
/* We don't want to completely free the dbManager, but rather we
* re-initialize all the fields except for mgr->counter to ensure we don't
* re-cycle connection ids across R/S DBI sessions in the the same pid
* (S/R session).
*/
void
RS_DBI_freeManager(Mgr_Handle mgrHandle)
{
RS_DBI_manager *mgr;
mgr = RS_DBI_getManager(mgrHandle);
if(mgr->num_con > 0){
char *errMsg = "all opened connections were forcebly closed";
RS_DBI_errorMessage(errMsg, RS_DBI_WARNING);
}
if(mgr->drvData){
char *errMsg = "mgr->drvData was not freed (some memory leaked)";
RS_DBI_errorMessage(errMsg, RS_DBI_WARNING);
}
if(mgr->drvName){
free(mgr->drvName);
mgr->drvName = (char *) NULL;
}
if(mgr->connections) {
free(mgr->connections);
mgr->connections = (RS_DBI_connection **) NULL;
}
if(mgr->connectionIds) {
free(mgr->connectionIds);
mgr->connectionIds = (Sint *) NULL;
}
return;
}
Con_Handle
RS_DBI_allocConnection(Mgr_Handle mgrHandle, Sint max_res)
{
RS_DBI_manager *mgr;
RS_DBI_connection *con;
Con_Handle conHandle;
Sint i, con_id;
mgr = RS_DBI_getManager(mgrHandle);
con = (RS_DBI_connection *) malloc(sizeof(RS_DBI_connection));
if(!con){
RS_DBI_errorMessage("could not malloc dbConnection", RS_DBI_ERROR);
}
con->managerId = MGR_ID(mgrHandle);
con_id = mgr->counter;
con->connectionId = con_id;
con->drvConnection = (void *) NULL;
con->drvData = (void *) NULL; /* to be used by the driver in any way*/
con->conParams = (void *) NULL;
con->counter = (Sint) 0;
con->length = max_res; /* length of resultSet vector */
/* result sets for this connection */
con->resultSets = (RS_DBI_resultSet **)
calloc((size_t) max_res, sizeof(RS_DBI_resultSet));
if(!con->resultSets){
free(con);
RS_DBI_errorMessage("could not calloc resultSets for the dbConnection",
RS_DBI_ERROR);
}
con->num_res = (Sint) 0;
con->resultSetIds = (Sint *) calloc((size_t) max_res, sizeof(Sint));
if(!con->resultSetIds) {
free(con->resultSets);
free(con);
RS_DBI_errorMessage("could not calloc vector of resultSet Ids",
RS_DBI_ERROR);
}
for(i=0; i<max_res; i++){
con->resultSets[i] = (RS_DBI_resultSet *) NULL;
con->resultSetIds[i] = -1;
}
/* Finally, update connection table in mgr */
mgr->num_con += (Sint) 1;
mgr->counter += (Sint) 1;
conHandle = RS_DBI_asConHandle(MGR_ID(mgrHandle), con_id, con);
return conHandle;
}
/* the invoking (freeing) function must provide a function for
* freeing the conParams, and by setting the (*free_drvConParams)(void *)
* pointer.
*/
void
RS_DBI_freeConnection(SEXP conHandle)
{
RS_DBI_connection *con;
RS_DBI_manager *mgr;
con = RS_DBI_getConnection(conHandle);
mgr = RS_DBI_getManager(conHandle);
/* Are there open resultSets? If so, free them first */
if(con->num_res > 0) {
char *errMsg = "opened resultSet(s) forcebly closed";
int i;
for(i=0; i < con->num_res; i++){
RS_DBI_freeResultSet0(con->resultSets[i], con);
}
RS_DBI_errorMessage(errMsg, RS_DBI_WARNING);
}
if(con->drvConnection) {
char *errMsg =
"internal error in RS_DBI_freeConnection: driver might have left open its connection on the server";
RS_DBI_errorMessage(errMsg, RS_DBI_WARNING);
}
if(con->conParams){
char *errMsg =
"internal error in RS_DBI_freeConnection: non-freed con->conParams (tiny memory leaked)";
RS_DBI_errorMessage(errMsg, RS_DBI_WARNING);
}
if(con->drvData){
char *errMsg =
"internal error in RS_DBI_freeConnection: non-freed con->drvData (some memory leaked)";
RS_DBI_errorMessage(errMsg, RS_DBI_WARNING);
}
/* delete this connection from manager's connection table */
if(con->resultSets) free(con->resultSets);
if(con->resultSetIds) free(con->resultSetIds);
/* update the manager's connection table */
mgr->num_con -= (Sint) 1;
free(con);
con = (RS_DBI_connection *) NULL;
R_ClearExternalPtr(conHandle);
}
SEXP
RS_DBI_allocResultSet(SEXP conHandle)
{
RS_DBI_connection *con = NULL;
RS_DBI_resultSet *result = NULL;
Sint indx, res_id;
con = RS_DBI_getConnection(conHandle);
indx = RS_DBI_newEntry(con->resultSetIds, con->length);
if(indx < 0){
char msg[128], fmt[128];
(void) strcpy(fmt, "cannot allocate a new resultSet -- ");
(void) strcat(fmt, "maximum of %d resultSets already reached");
(void) sprintf(msg, fmt, con->length);
RS_DBI_errorMessage(msg, RS_DBI_ERROR);
}
result = (RS_DBI_resultSet *) malloc(sizeof(RS_DBI_resultSet));
if(!result){
char *errMsg = "could not malloc dbResultSet";
RS_DBI_freeEntry(con->resultSetIds, indx);
RS_DBI_errorMessage(errMsg, RS_DBI_ERROR);
}
result->drvResultSet = (void *) NULL; /* driver's own resultSet (cursor)*/
result->drvData = (void *) NULL; /* this can be used by driver*/
result->statement = (char *) NULL;
result->managerId = MGR_ID(conHandle);
result->connectionId = CON_ID(conHandle);
result->resultSetId = con->counter;
result->isSelect = (Sint) -1;
result->rowsAffected = (Sint) -1;
result->rowCount = (Sint) 0;
result->completed = (Sint) -1;
result->fields = (RS_DBI_fields *) NULL;
/* update connection's resultSet table */
res_id = con->counter;
con->num_res += (Sint) 1;
con->counter += (Sint) 1;
con->resultSets[indx] = result;
con->resultSetIds[indx] = res_id;
return RS_DBI_asResHandle(MGR_ID(conHandle), CON_ID(conHandle), res_id,
conHandle);
}
void RS_DBI_freeResultSet0(RS_DBI_resultSet *result, RS_DBI_connection *con)
{
if(result->drvResultSet) {
char *errMsg =
"internal error in RS_DBI_freeResultSet: "
"non-freed result->drvResultSet (some memory leaked)";
RS_DBI_errorMessage(errMsg, RS_DBI_ERROR);
}
if (result->drvData) {
char *errMsg =
"internal error in RS_DBI_freeResultSet: "
"non-freed result->drvData (some memory leaked)";
RS_DBI_errorMessage(errMsg, RS_DBI_WARNING);
}
if (result->statement)
free(result->statement);
if (result->fields)
RS_DBI_freeFields(result->fields);
free(result);
result = (RS_DBI_resultSet *) NULL;
/* update connection's resultSet table */
/* indx = RS_DBI_lookup(con->resultSetIds, con->length, RES_ID(rsHandle)); */
/* SQLite connections only ever have one result set */
RS_DBI_freeEntry(con->resultSetIds, 0);
con->resultSets[0] = NULL;
con->num_res -= 1;
}
void
RS_DBI_freeResultSet(Res_Handle rsHandle)
{
RS_DBI_freeResultSet0(RS_DBI_getResultSet(rsHandle),
RS_DBI_getConnection(rsHandle));
}
RS_DBI_fields *
RS_DBI_allocFields(int num_fields)
{
RS_DBI_fields *flds;
size_t n;
flds = (RS_DBI_fields *)malloc(sizeof(RS_DBI_fields));
if(!flds){
char *errMsg = "could not malloc RS_DBI_fields";
RS_DBI_errorMessage(errMsg, RS_DBI_ERROR);
}
n = (size_t) num_fields;
flds->num_fields = num_fields;
flds->name = (char **) calloc(n, sizeof(char *));
flds->type = (Sint *) calloc(n, sizeof(Sint));
flds->length = (Sint *) calloc(n, sizeof(Sint));
flds->precision= (Sint *) calloc(n, sizeof(Sint));
flds->scale = (Sint *) calloc(n, sizeof(Sint));
flds->nullOk = (Sint *) calloc(n, sizeof(Sint));
flds->isVarLength = (Sint *) calloc(n, sizeof(Sint));
flds->Sclass = (Stype *) calloc(n, sizeof(Stype));
return flds;
}
void
RS_DBI_freeFields(RS_DBI_fields *flds)
{
if(flds->name) free(flds->name);
if(flds->type) free(flds->type);
if(flds->length) free(flds->length);
if(flds->precision) free(flds->precision);
if(flds->scale) free(flds->scale);
if(flds->nullOk) free(flds->nullOk);
if(flds->isVarLength) free(flds->isVarLength);
if(flds->Sclass) free(flds->Sclass);
free(flds);
flds = (RS_DBI_fields *) NULL;
return;
}
/* Make a data.frame from a named list by adding row.names, and class
* attribute. Use "1", "2", .. as row.names.
* NOTE: Only tested under R (not tested at all under S4 or Splus5+).
*/
void
RS_DBI_makeDataFrame(SEXP data)
{
SEXP row_names, df_class_name;
Sint i, n;
char buf[1024];
PROTECT(data);
PROTECT(df_class_name = NEW_CHARACTER((Sint) 1));
SET_CHR_EL(df_class_name, 0, C_S_CPY("data.frame"));
/* row.names */
n = GET_LENGTH(LST_EL(data,0)); /* length(data[[1]]) */
PROTECT(row_names = NEW_CHARACTER(n));
for(i=0; i<n; i++){
(void) sprintf(buf, "%d", i+1);
SET_CHR_EL(row_names, i, C_S_CPY(buf));
}
SET_ROWNAMES(data, row_names);
SET_CLASS_NAME(data, df_class_name);
UNPROTECT(3);
return;
}
void
RS_DBI_allocOutput(SEXP output, RS_DBI_fields *flds,
Sint num_rec, Sint expand)
{
SEXP names, s_tmp;
Sint j;
int num_fields;
Stype *fld_Sclass;
PROTECT(output);
num_fields = flds->num_fields;
if(expand){
for(j = 0; j < (Sint) num_fields; j++){
/* Note that in R-1.2.3 (at least) we need to protect SET_LENGTH */
s_tmp = LST_EL(output,j);
PROTECT(SET_LENGTH(s_tmp, num_rec));
SET_VECTOR_ELT(output, j, s_tmp);
UNPROTECT(1);
}
UNPROTECT(1);
return;
}
fld_Sclass = flds->Sclass;
for(j = 0; j < (Sint) num_fields; j++){
switch((int)fld_Sclass[j]){
case LGLSXP:
SET_VECTOR_ELT(output, j, NEW_LOGICAL(num_rec));
break;
case STRSXP:
SET_VECTOR_ELT(output, j, NEW_CHARACTER(num_rec));
break;
case INTSXP:
SET_VECTOR_ELT(output, j, NEW_INTEGER(num_rec));
break;
case REALSXP:
SET_VECTOR_ELT(output, j, NEW_NUMERIC(num_rec));
break;
case RAWSXP: /* falls through */
case VECSXP:
SET_VECTOR_ELT(output, j, NEW_LIST(num_rec));
break;
default:
RS_DBI_errorMessage("unsupported data type", RS_DBI_ERROR);
}
}
PROTECT(names = NEW_CHARACTER((Sint) num_fields));
for(j = 0; j< (Sint) num_fields; j++){
SET_CHR_EL(names,j, C_S_CPY(flds->name[j]));
}
SET_NAMES(output, names);
UNPROTECT(2);
return;
}
SEXP /* boolean */
RS_DBI_validHandle(Db_Handle handle)
{
SEXP valid, contents;
int handleType = 0;
if (TYPEOF(handle) != EXTPTRSXP) return 0;
contents = R_ExternalPtrProtected(handle);
if (TYPEOF(contents) == VECSXP) {
handleType = RES_HANDLE_TYPE;
} else {
switch(length(contents)) {
case MGR_HANDLE_TYPE:
handleType = MGR_HANDLE_TYPE;
break;
case CON_HANDLE_TYPE:
handleType = CON_HANDLE_TYPE;
break;
case RES_HANDLE_TYPE:
handleType = RES_HANDLE_TYPE;
break;
}
}
PROTECT(valid = NEW_LOGICAL((Sint) 1));
LGL_EL(valid,0) = (Sint) is_validHandle(handle, handleType);
UNPROTECT(1);
return valid;
}
void
RS_DBI_setException(Db_Handle handle, DBI_EXCEPTION exceptionType,
int errorNum, const char *errorMsg)
{
HANDLE_TYPE handleType;
handleType = (int) GET_LENGTH(handle);
if(handleType == MGR_HANDLE_TYPE){
RS_DBI_manager *obj;
obj = RS_DBI_getManager(handle);
obj->exception->exceptionType = exceptionType;
obj->exception->errorNum = errorNum;
obj->exception->errorMsg = RS_DBI_copyString(errorMsg);
}
else if(handleType==CON_HANDLE_TYPE){
RS_DBI_connection *obj;
obj = RS_DBI_getConnection(handle);
obj->exception->exceptionType = exceptionType;
obj->exception->errorNum = errorNum;
obj->exception->errorMsg = RS_DBI_copyString(errorMsg);
}
else {
RS_DBI_errorMessage(
"internal error in RS_DBI_setException: could not setException",
RS_DBI_ERROR);
}
return;
}
void
RS_DBI_errorMessage(const char *msg, DBI_EXCEPTION exception_type)
{
char *driver = "RS-DBI"; /* TODO: use the actual driver name */
switch(exception_type) {
case RS_DBI_MESSAGE:
PROBLEM "%s driver message: (%s)", driver, msg WARN; /* was PRINT_IT */
break;
case RS_DBI_WARNING:
PROBLEM "%s driver warning: (%s)", driver, msg WARN;
break;
case RS_DBI_ERROR:
PROBLEM "%s driver: (%s)", driver, msg ERROR;
break;
case RS_DBI_TERMINATE:
PROBLEM "%s driver fatal: (%s)", driver, msg ERROR; /* was TERMINATE */
break;
}
return;
}
void DBI_MSG(char *msg, DBI_EXCEPTION exception_type, char *driver)
{
switch (exception_type) {
case RS_DBI_MESSAGE:
PROBLEM "%s driver message: (%s)", driver, msg WARN;
break;
case RS_DBI_WARNING:
PROBLEM "%s driver warning: (%s)", driver, msg WARN;
break;
case RS_DBI_ERROR:
PROBLEM "%s driver: (%s)", driver, msg ERROR;
break;
case RS_DBI_TERMINATE: /* is this used? */
PROBLEM "%s driver fatal: (%s)", driver, msg ERROR;
break;
}
return;
}
/* wrapper to strcpy */
char *
RS_DBI_copyString(const char *str)
{
char *buffer;
buffer = (char *) malloc((size_t) strlen(str)+1);
if(!buffer)
RS_DBI_errorMessage(
"internal error in RS_DBI_copyString: could not alloc string space",
RS_DBI_ERROR);
return strcpy(buffer, str);
}
/* wrapper to strncpy, plus (optionally) deleting trailing spaces */
char *
RS_DBI_nCopyString(const char *str, size_t len, int del_blanks)
{
char *str_buffer, *end;
str_buffer = (char *) malloc(len+1);
if(!str_buffer){
char errMsg[128];
(void) sprintf(errMsg,
"could not malloc %ld bytes in RS_DBI_nCopyString",
(long) len+1);
RS_DBI_errorMessage(errMsg, RS_DBI_ERROR);
}
if(len==0){
*str_buffer = '\0';
return str_buffer;
}
(void) strncpy(str_buffer, str, len);
/* null terminate string whether we delete trailing blanks or not*/
if(del_blanks){
for(end = str_buffer+len-1; end>=str_buffer; end--)
if(*end != ' ') { end++; break; }
*end = '\0';
}
else {
end = str_buffer + len;
*end = '\0';
}
return str_buffer;
}
SEXP
RS_DBI_copyfields(RS_DBI_fields *flds)
{
SEXP S_fields;
Sint n = (Sint) 8;
char *desc[]={"name", "Sclass", "type", "len", "precision",
"scale","isVarLength", "nullOK"};
Stype types[] = {STRSXP, INTSXP, INTSXP,
INTSXP, INTSXP, INTSXP,
LGLSXP, LGLSXP};
Sint lengths[8];
int i, j, num_fields;
num_fields = flds->num_fields;
for(j = 0; j < n; j++)
lengths[j] = (Sint) num_fields;
S_fields = RS_DBI_createNamedList(desc, types, lengths, n);
/* copy contentes from flds into an R/S list */
for(i = 0; i < num_fields; i++){
SET_LST_CHR_EL(S_fields,0,i, C_S_CPY(flds->name[i]));
LST_INT_EL(S_fields,1,i) = (Sint) flds->Sclass[i];
LST_INT_EL(S_fields,2,i) = (Sint) flds->type[i];
LST_INT_EL(S_fields,3,i) = (Sint) flds->length[i];
LST_INT_EL(S_fields,4,i) = (Sint) flds->precision[i];
LST_INT_EL(S_fields,5,i) = (Sint) flds->scale[i];
LST_INT_EL(S_fields,6,i) = (Sint) flds->isVarLength[i];
LST_INT_EL(S_fields,7,i) = (Sint) flds->nullOk[i];
}
return S_fields;
}
SEXP
RS_DBI_createNamedList(char **names, Stype *types, Sint *lengths, Sint n)
{
SEXP output, output_names, obj = S_NULL_ENTRY;
Sint num_elem;
int j;
PROTECT(output = NEW_LIST(n));
PROTECT(output_names = NEW_CHARACTER(n));
for(j = 0; j < n; j++){
num_elem = lengths[j];
switch((int)types[j]){
case LGLSXP:
PROTECT(obj = NEW_LOGICAL(num_elem));
break;
case INTSXP:
PROTECT(obj = NEW_INTEGER(num_elem));
break;
case REALSXP:
PROTECT(obj = NEW_NUMERIC(num_elem));
break;
case STRSXP:
PROTECT(obj = NEW_CHARACTER(num_elem));
break;
case RAWSXP: /* falls through */
case LIST_TYPE:
PROTECT(obj = NEW_LIST(num_elem));
break;
default:
RS_DBI_errorMessage("unsupported data type", RS_DBI_ERROR);
}
SET_VECTOR_ELT(output, (Sint)j, obj);
SET_CHR_EL(output_names, j, C_S_CPY(names[j]));
}
SET_NAMES(output, output_names);
UNPROTECT(n+2);
return(output);
}
SEXP
RS_DBI_SclassNames(SEXP type)
{
SEXP typeNames;
Sint *typeCodes;
Sint n;
int i;
char *s;
if(type==S_NULL_ENTRY)
RS_DBI_errorMessage(
"internal error in RS_DBI_SclassNames: input S types must be nonNULL",
RS_DBI_ERROR);
n = LENGTH(type);
typeCodes = INTEGER_DATA(type);
PROTECT(typeNames = NEW_CHARACTER(n));
for(i = 0; i < n; i++) {
s = RS_DBI_getTypeName(typeCodes[i], RS_dataTypeTable);
if(!s)
RS_DBI_errorMessage(
"internal error RS_DBI_SclassNames: unrecognized S type",
RS_DBI_ERROR);
SET_CHR_EL(typeNames, i, C_S_CPY(s));
}
UNPROTECT(1);
return typeNames;
}
/* The following functions roughly implement a simple object
* database.
*/
SEXP
RS_DBI_asMgrHandle(int mgrId)
{
SEXP mgrHandle, label, ids;
PROTECT(ids = allocVector(INTSXP, 1));
INTEGER(ids)[0] = mgrId;
PROTECT(label = mkString("DBI MGR"));
mgrHandle = R_MakeExternalPtr(NULL, label, ids);
UNPROTECT(2);
/* FIXME: add finalizer code */
return mgrHandle;
}
/* FIXME: need to address this fwd declaration */
SEXP
RS_SQLite_closeConnection(Con_Handle conHandle);
static void _finalize_con_handle(SEXP xp)
{
if (R_ExternalPtrAddr(xp)) {
RS_SQLite_closeConnection(xp);
R_ClearExternalPtr(xp);
}
}
SEXP
RS_DBI_asConHandle(int mgrId, int conId, RS_DBI_connection *con)
{
SEXP conHandle, s_ids, label;
int *ids;
PROTECT(s_ids = allocVector(INTSXP, 2));
ids = INTEGER(s_ids);
ids[0] = mgrId;
ids[1] = conId;
PROTECT(label = mkString("DBI CON"));
conHandle = R_MakeExternalPtr(con, label, s_ids);
UNPROTECT(2);
R_RegisterCFinalizerEx(conHandle, _finalize_con_handle, 1);
return conHandle;
}
SEXP
DBI_newResultHandle(SEXP xp, SEXP resId)
{
int *ids = INTEGER(R_ExternalPtrProtected(xp));
return RS_DBI_asResHandle(ids[0], ids[1], INTEGER(resId)[0], xp);
}
SEXP
RS_DBI_asResHandle(int mgrId, int conId, int resId, SEXP conxp)
{
SEXP resHandle, s_ids, label, v;
int *ids;
PROTECT(s_ids = allocVector(INTSXP, 3));
ids = INTEGER(s_ids);
ids[0] = mgrId;
ids[1] = conId;
ids[2] = resId;
PROTECT(v = allocVector(VECSXP, 2));
SET_VECTOR_ELT(v, 0, s_ids);
/* this ensures the connection is preserved as long as
there is a reference to a result set
*/
SET_VECTOR_ELT(v, 1, conxp);
PROTECT(label = mkString("DBI RES"));
resHandle = R_MakeExternalPtr(R_ExternalPtrAddr(conxp), label, v);
UNPROTECT(3);
/* FIXME: add finalizer code */
return resHandle;
}
RS_DBI_manager *
RS_DBI_getManager(SEXP handle)
{
RS_DBI_manager *mgr;
if(!is_validHandle(handle, MGR_HANDLE_TYPE))
RS_DBI_errorMessage("invalid dbManager handle", RS_DBI_ERROR);
mgr = dbManager;
if(!mgr)
RS_DBI_errorMessage(
"internal error in RS_DBI_getManager: corrupt dbManager handle",
RS_DBI_ERROR);
return mgr;
}
RS_DBI_connection *
RS_DBI_getConnection(SEXP conHandle)
{
RS_DBI_connection *con = (RS_DBI_connection *)R_ExternalPtrAddr(conHandle);
if (!con) RS_DBI_errorMessage("expired SQLiteConnection", RS_DBI_ERROR);
return con;
}
RS_DBI_resultSet *
RS_DBI_getResultSet(SEXP rsHandle)
{
RS_DBI_connection *con;
con = RS_DBI_getConnection(rsHandle);
if(!con)
RS_DBI_errorMessage(
"internal error in RS_DBI_getResultSet: bad connection",
RS_DBI_ERROR);
return con->resultSets[0];
}
/* Very simple objectId (mapping) table. newEntry() returns an index
* to an empty cell in table, and lookup() returns the position in the
* table of obj_id. Notice that we decided not to touch the entries
* themselves to give total control to the invoking functions (this
* simplify error management in the invoking routines.)
*/
Sint
RS_DBI_newEntry(Sint *table, Sint length)
{
Sint i, indx, empty_val;
indx = empty_val = (Sint) -1;
for(i = 0; i < length; i++)
if(table[i] == empty_val){
indx = i;
break;
}
return indx;
}
Sint
RS_DBI_lookup(Sint *table, Sint length, Sint obj_id)
{
Sint i, indx = (Sint) -1;
if (obj_id != -1) {
for (i = 0; i < length; ++i) {
if (table[i] == obj_id) {
indx = i;
break;
}
}
}
return indx;
}
/* return a list of entries pointed by *entries (we allocate the space,
* but the caller should free() it). The function returns the number
* of entries.
*/
Sint
RS_DBI_listEntries(Sint *table, Sint length, Sint *entries)
{
int i,n;
for(i=n=0; i<length; i++){
if(table[i]<0) continue;
entries[n++] = table[i];
}
return n;
}
void
RS_DBI_freeEntry(Sint *table, Sint indx)
{ /* no error checking!!! */
Sint empty_val = (Sint) -1;
table[indx] = empty_val;
return;
}
int
is_validHandle(SEXP handle, HANDLE_TYPE handleType)
{
int mgr_id, len, indx;
RS_DBI_manager *mgr;
RS_DBI_connection *con;
if (TYPEOF(handle) != EXTPTRSXP) return 0;
len = HANDLE_LENGTH(handle);
if(len<handleType || handleType<1 || handleType>3)
return 0;
mgr_id = MGR_ID(handle);
if(mgr_id <= 0) return 0;
/* at least we have a potential valid dbManager */
mgr = dbManager;
if(!mgr || !mgr->connections) return 0; /* expired manager*/
if(handleType == MGR_HANDLE_TYPE) return 1; /* valid manager id */
/* ... on to connections */
con = R_ExternalPtrAddr(handle);
if (!con) return 0;
if(!con->resultSets) return 0; /* un-initialized (invalid) */
if(handleType==CON_HANDLE_TYPE) return 1; /* valid connection id */
/* .. on to resultSets */
indx = RS_DBI_lookup(con->resultSetIds, con->length, RES_ID(handle));
if(indx < 0) return 0;
if(!con->resultSets[indx]) return 0;
return 1;
}
/* The following 3 routines provide metadata for the 3 main objects
* dbManager, dbConnection and dbResultSet. These functions
* an object Id and return a list with all the meta-data. In R/S we
* simply invoke one of these and extract the metadata piece we need,
* which can be NULL if non-existent or un-implemented.
*
* Actually, each driver should modify these functions to add the
* driver-specific info, such as server version, client version, etc.
* That's how the various RS_MySQL_managerInfo, etc., were implemented.
*/
SEXP /* named list */
RS_DBI_managerInfo(Mgr_Handle mgrHandle)
{
RS_DBI_manager *mgr;
SEXP output;
Sint i, num_con;
Sint n = (Sint) 7;
char *mgrDesc[] = {"connectionIds", "fetch_default_rec","managerId",
"length", "num_con", "counter", "clientVersion"};
Stype mgrType[] = {INTSXP, INTSXP, INTSXP,
INTSXP, INTSXP, INTSXP,
STRSXP};
Sint mgrLen[] = {1, 1, 1, 1, 1, 1, 1};
mgr = RS_DBI_getManager(mgrHandle);
num_con = (Sint) mgr->num_con;
mgrLen[0] = num_con;
output = RS_DBI_createNamedList(mgrDesc, mgrType, mgrLen, n);
for(i = 0; i < num_con; i++)
LST_INT_EL(output,0,i) = (Sint) mgr->connectionIds[i];
LST_INT_EL(output,1,0) = (Sint) mgr->fetch_default_rec;
LST_INT_EL(output,2,0) = (Sint) mgr->managerId;
LST_INT_EL(output,3,0) = (Sint) mgr->length;
LST_INT_EL(output,4,0) = (Sint) mgr->num_con;
LST_INT_EL(output,5,0) = (Sint) mgr->counter;
SET_LST_CHR_EL(output,6,0,C_S_CPY("NA")); /* client versions? */
return output;
}
/* The following should be considered templetes to be
* implemented by individual drivers.
*/
SEXP /* return a named list */
RS_DBI_connectionInfo(Con_Handle conHandle)
{
RS_DBI_connection *con;
SEXP output;
Sint i;
Sint n = (Sint) 8;
char *conDesc[] = {"host", "user", "dbname", "conType",
"serverVersion", "protocolVersion",
"threadId", "rsHandle"};
Stype conType[] = {STRSXP, STRSXP, STRSXP,
STRSXP, STRSXP, INTSXP,
INTSXP, INTSXP};
Sint conLen[] = {1, 1, 1, 1, 1, 1, 1, -1};
con = RS_DBI_getConnection(conHandle);
conLen[7] = con->num_res; /* number of resultSets opened */
output = RS_DBI_createNamedList(conDesc, conType, conLen, n);
/* dummy */
SET_LST_CHR_EL(output,0,0,C_S_CPY("NA")); /* host */
SET_LST_CHR_EL(output,1,0,C_S_CPY("NA")); /* dbname */
SET_LST_CHR_EL(output,2,0,C_S_CPY("NA")); /* user */
SET_LST_CHR_EL(output,3,0,C_S_CPY("NA")); /* conType */
SET_LST_CHR_EL(output,4,0,C_S_CPY("NA")); /* serverVersion */
LST_INT_EL(output,5,0) = (Sint) -1; /* protocolVersion */
LST_INT_EL(output,6,0) = (Sint) -1; /* threadId */
for(i=0; i < con->num_res; i++)
LST_INT_EL(output,7,(Sint) i) = con->resultSetIds[i];
return output;
}
SEXP /* return a named list */
RS_DBI_resultSetInfo(Res_Handle rsHandle)
{
RS_DBI_resultSet *result;
SEXP output, flds;
Sint n = (Sint) 6;
char *rsDesc[] = {"statement", "isSelect", "rowsAffected",
"rowCount", "completed", "fields"};
Stype rsType[] = {STRSXP, INTSXP, INTSXP,
INTSXP, INTSXP, LIST_TYPE};
Sint rsLen[] = {1, 1, 1, 1, 1, 1};
result = RS_DBI_getResultSet(rsHandle);
if(result->fields)
flds = RS_DBI_copyfields(result->fields);
else
flds = S_NULL_ENTRY;
output = RS_DBI_createNamedList(rsDesc, rsType, rsLen, n);
SET_LST_CHR_EL(output,0,0,C_S_CPY(result->statement));
LST_INT_EL(output,1,0) = result->isSelect;
LST_INT_EL(output,2,0) = result->rowsAffected;
LST_INT_EL(output,3,0) = result->rowCount;
LST_INT_EL(output,4,0) = result->completed;
SET_VECTOR_ELT(LST_EL(output, 5), (Sint) 0, flds);
return output;
}
SEXP /* named list */
RS_DBI_getFieldDescriptions(RS_DBI_fields *flds)
{
SEXP S_fields;
Sint n = (Sint) 7;
Sint lengths[7];
char *desc[]={"name", "Sclass", "type", "len", "precision",
"scale","nullOK"};
Stype types[] = {STRSXP, INTSXP, INTSXP,
INTSXP, INTSXP, INTSXP,
LGLSXP};
Sint i, j;
int num_fields;
num_fields = flds->num_fields;
for(j = 0; j < n; j++)
lengths[j] = (Sint) num_fields;
PROTECT(S_fields = RS_DBI_createNamedList(desc, types, lengths, n));
/* copy contentes from flds into an R/S list */
for(i = 0; i < (Sint) num_fields; i++){
SET_LST_CHR_EL(S_fields,0,i,C_S_CPY(flds->name[i]));
LST_INT_EL(S_fields,1,i) = (Sint) flds->Sclass[i];
LST_INT_EL(S_fields,2,i) = (Sint) flds->type[i];
LST_INT_EL(S_fields,3,i) = (Sint) flds->length[i];
LST_INT_EL(S_fields,4,i) = (Sint) flds->precision[i];
LST_INT_EL(S_fields,5,i) = (Sint) flds->scale[i];
LST_INT_EL(S_fields,6,i) = (Sint) flds->nullOk[i];
}
UNPROTECT(1);
return(S_fields);
}
/* given a type id return its human-readable name.
* We define an RS_DBI_dataTypeTable */
char *
RS_DBI_getTypeName(Sint t, const struct data_types table[])
{
int i;
char buf[128];
for (i = 0; table[i].typeName != (char *) 0; i++) {
if (table[i].typeId == t)
return table[i].typeName;
}
sprintf(buf, "unknown (%ld)", (long) t);
RS_DBI_errorMessage(buf, RS_DBI_WARNING);
return (char *) 0; /* for -Wall */
}
/* Translate R/S identifiers (and only R/S names!!!) into
* valid SQL identifiers; overwrite input vector. Currently,
* (1) translate "." into "_".
* (2) first character should be a letter (traslate to "X" if not),
* but a double quote signals a "delimited identifier"
* (3) check that length <= 18, but only warn, since most (all?)
* dbms allow much longer identifiers.
* (4) SQL reserved keywords are handled in the R/S calling
* function make.SQL.names(), not here.
* BUG: Compound SQL identifiers are not handled properly.
* Note the the dot "." is a valid SQL delimiter, used for specifying
* user/table in a compound identifier. Thus, it's possible that
* such compound name is mapped into a legal R/S identifier (preserving
* the "."), and then we incorrectly map such delimiting "dot" into "_"
* thus loosing the original SQL compound identifier.
*/
#define RS_DBI_MAX_IDENTIFIER_LENGTH 18 /* as per SQL92 */
SEXP
RS_DBI_makeSQLNames(SEXP snames)
{
long nstrings;
char *name;
SEXP schar;
char c;
char errMsg[128];
size_t len;
Sint i;
nstrings = (Sint) GET_LENGTH(snames);
for(i = 0; i<nstrings; i++){
schar = STRING_ELT(snames, i);
name = CallocCharBuf(length(schar));
strncpy(name, CHAR(schar), length(schar));
if(strlen(name)> RS_DBI_MAX_IDENTIFIER_LENGTH){
(void) sprintf(errMsg,"SQL identifier %s longer than %d chars",
name, RS_DBI_MAX_IDENTIFIER_LENGTH);
RS_DBI_errorMessage(errMsg, RS_DBI_WARNING);
}
/* check for delimited-identifiers (those in double-quotes);
* if missing closing double-quote, warn and treat as non-delim
*/
c = *name;
len = strlen(name);
if(c=='"' && name[len-1] =='"')
continue;
if(!isalpha(c) && c!='"') *name = 'X';
name++;
while((c=*name)){
/* TODO: recognize SQL delim "." instances that may have
* originated in SQL and R/S make.names() left alone */
if(c=='.') *name='_';
name++;
}
SET_STRING_ELT(snames, i, mkChar(name));
Free(name);
}
return snames;
}
/* These 2 R-specific functions are used by the C macros IS_NA(p,t)
* and NA_SET(p,t) (in this way one simply use macros to test and set
* NA's regardless whether we're using R or S.
*/
void RS_na_set(void *ptr, Stype type)
{
double *d;
Sint *i;
const char *c;
switch(type){
case INTSXP:
i = (Sint *) ptr;
*i = NA_INTEGER;
break;
case LGLSXP:
i = (Sint *) ptr;
*i = NA_LOGICAL;
break;
case REALSXP:
d = (double *) ptr;
*d = NA_REAL;
break;
case CHARSXP:
c = (const char *) ptr;
c = CHAR(NA_STRING);
break;
}
}
int RS_is_na(void *ptr, Stype type)
{
int *i, out = -2;
const char *c;
double *d;
switch(type){
case INTSXP:
case LGLSXP:
i = (int *) ptr;
out = (int) ((*i) == NA_INTEGER);
break;
case REALSXP:
d = (double *) ptr;
out = ISNA(*d);
break;
case CHARSXP:
c = (const char *) ptr;
out = (int) (strcmp(c, CHAR(NA_STRING))==0);
break;
}
return out;
}
/* the codes come from from R/src/main/util.c */
const struct data_types RS_dataTypeTable[] = {
{ "NULL", NILSXP }, /* real types */
{ "symbol", SYMSXP },
{ "pairlist", LISTSXP },
{ "closure", CLOSXP },
{ "environment", ENVSXP },
{ "promise", PROMSXP },
{ "language", LANGSXP },
{ "special", SPECIALSXP },
{ "builtin", BUILTINSXP },
{ "char", CHARSXP },
{ "logical", LGLSXP },
{ "integer", INTSXP },
{ "double", REALSXP }, /*- "real", for R <= 0.61.x */
{ "complex", CPLXSXP },
{ "character", STRSXP },
{ "...", DOTSXP },
{ "any", ANYSXP },
{ "expression", EXPRSXP },
{ "list", VECSXP },
{ "raw", RAWSXP },
/* aliases : */
{ "numeric", REALSXP },
{ "name", SYMSXP },
{ (char *)0, -1 }
};
SEXP DBI_handle_to_string(SEXP xp)
{
char *buf;
SEXP ans, tag, ids;
int len, *v;
if (TYPEOF(xp) != EXTPTRSXP)
RS_DBI_errorMessage("DBI_handle_to_string: invalid handle",
RS_DBI_ERROR);
tag = STRING_ELT(R_ExternalPtrTag(xp), 0);
ids = R_ExternalPtrProtected(xp);
if (TYPEOF(ids) == VECSXP) ids = VECTOR_ELT(ids, 0);
len = strlen(CHAR(tag)) + 20;
buf = CallocCharBuf(len);
v = INTEGER(ids);
switch (length(ids)) {
case 1:
snprintf(buf, len, "%s (%d)", CHAR(tag), v[0]);
break;
case 2:
snprintf(buf, len, "%s (%d, %d)", CHAR(tag), v[0], v[1]);
break;
case 3:
snprintf(buf, len, "%s (%d, %d, %d)", CHAR(tag), v[0], v[1], v[2]);
break;
default:
snprintf(buf, len, "%s", "BAD LENGTH");
}
ans = mkString(buf);
Free(buf);
return ans;
}
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