File: NAMESPACE

package info (click to toggle)
r-cran-rstan 2.19.3-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye, sid
  • size: 3,224 kB
  • sloc: cpp: 9,509; sh: 13; makefile: 2
file content (110 lines) | stat: -rw-r--r-- 2,742 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
useDynLib(rstan, .registration = TRUE)
# exportPattern("^[[:alpha:]]+")

importFrom("graphics", "hist", "lines", "mtext", "par", "points", "rect", "segments", "smoothScatter", "strheight", "strwidth", "text")
importFrom("grDevices", "devAskNewPage", "hcl", "rgb")
importFrom("stats", "acf", "aggregate", "density", "dnorm", "fft", "median", "optimHess", "pacf", "qbeta", "qnorm", "quantile", "reshape", "rnorm", "runif", "sd", "setNames", "var")
importFrom("utils", "apropos", "assignInMyNamespace", "capture.output", "download.file", "head", "menu", "object.size", "packageDescription", "packageVersion", "relist", "select.list", "str", "tail", "unzip")

importFrom("stats4", summary, plot)
importFrom("inline", cxxfunction, getDynLib, getPlugin)
importFrom("pkgbuild", with_build_tools)
#importFrom("Rcpp", cpp_object_initializer)
import("methods")
import(Rcpp)
import(StanHeaders)

importFrom("gridExtra","arrangeGrob","grid.arrange")
import(ggplot2)

export(
  sbc,
  stan_model,
  stanc,
  stanc_builder,
  stan_version, 
  stan,
  stan_rdump,
  read_rdump,
  makeconf_path,
  sflist2stanfit,
  read_stan_csv,
  monitor,
  lookup,
  expose_stan_functions,
  stan_demo,
  rstan_options,
  As.mcmc.list,
  set_cppo,
  stan_plot, 
  stan_trace, 
  stan_hist, 
  stan_dens, 
  stan_scat,
  stan_ac, 
  stan_diag,
  stan_par,
  stan_rhat,
  stan_ess,
  stan_mcse,
  rstan_gg_options,
  rstan_ggtheme_options,
  quietgg,
  extract_sparse_parts,
  rstan.package.skeleton,
  cpp_object_initializer,
# get_rstan.options
  check_hmc_diagnostics,
  check_divergences, 
  check_treedepth, 
  check_energy,
  get_divergent_iterations,
  get_max_treedepth_iterations,
  get_num_leapfrog_per_iteration,
  get_num_divergent,
  get_num_max_treedepth,
  get_bfmi,
  get_low_bfmi_chains,
  get_rng,
  get_stream,
  RNG, OUT,
  Rhat, ess_bulk, ess_tail
)

exportClasses(
  stanmodel, stanfit 
) 
exportMethods(
#   print, plot, 
#   extract, 
  optimizing, vb, gqs,
  get_cppcode, get_cxxflags, # for stanmodel 
  show, sampling, summary, extract,
  traceplot, plot, get_stancode, get_inits, get_seed, get_cppo_mode,
  log_prob, grad_log_prob, 
  unconstrain_pars, constrain_pars, get_num_upars,
  get_seeds,
  get_adaptation_info,
  get_sampler_params,
  get_logposterior, 
  get_posterior_mean,
  get_elapsed_time,
  get_stanmodel,
  loo
)
S3method(print, stanfit)
S3method(as.array, stanfit)
S3method(as.matrix, stanfit)
S3method(as.data.frame, stanfit)
S3method(is.array, stanfit)
S3method(dim, stanfit)
S3method(dimnames, stanfit)
S3method(names, stanfit)
S3method(`names<-`, stanfit)
S3method(pairs, stanfit)
S3method(loo, stanfit)
importFrom("loo", "loo", "loo.array")
export("loo")
S3method(print, sbc)
S3method(plot, sbc)
S3method(`[`, simsummary)