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import(shiny)
importFrom(shinyFiles, shinyFilesButton, shinyFileChoose, getVolumes)
importFrom(openxlsx, read.xlsx, writeData, saveWorkbook, insertImage, addStyle, addWorksheet,
createWorkbook, setColWidths)
import(matrixStats)
importFrom(GSA, GSA, GSA.correlate, GSA.func, GSA.genescores, GSA.listsets, GSA.make.features,
GSA.plot, GSA.read.gmt)
importFrom(impute, impute.knn)
importFrom("grDevices", "dev.off")
importFrom("graphics", "abline", "lines", "mtext", "par", "plot",
"points", "title")
importFrom("stats", "mad", "median", "predict", "quantile", "rpois",
"runif", "smooth.spline", "var")
S3method(print, SAMoutput)
S3method(plot, SAMoutput)
export(SAM,
SAMseq,
plot.SAMoutput,
print.SAMoutput,
samr,
check.format,
quantitative.func,
ttest.func,
samr.assess.samplesize,
samr.assess.samplesize.plot,
samr.compute.delta.table,
samr.compute.siggenes.table,
samr.plot,
samr.missrate,
samr.norm.data,
samr.estimate.depth,
samr.pvalues.from.perms,
samr.tail.strength,
samr.const.quantitative.response,
samr.const.twoclass.unpaired.response,
samr.const.survival.response,
samr.const.multiclass.response,
samr.const.oneclass.response,
samr.const.twoclass.paired.response,
samr.const.twoclass.unpaired.timecourse.response,
samr.const.twoclass.paired.timecourse.response,
samr.const.oneclass.timecourse.response,
samr.const.patterndiscovery.response,
runSAM)
useDynLib(samr)
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