1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44
|
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/plotting.R
\name{plot_model_pars}
\alias{plot_model_pars}
\title{Plot estimated and fitted model parameters}
\usage{
plot_model_pars(
vst_out,
xaxis = "gmean",
show_theta = FALSE,
show_var = FALSE,
verbosity = 2,
verbose = NULL,
show_progress = NULL
)
}
\arguments{
\item{vst_out}{The output of a vst run}
\item{xaxis}{Variable to plot on X axis; default is "gmean"}
\item{show_theta}{Whether to show the theta parameter; default is FALSE (only the overdispersion factor is shown)}
\item{show_var}{Whether to show the average model variance; default is FALSE}
\item{verbosity}{An integer specifying whether to show only messages (1), messages and progress bars (2) or nothing (0) while the function is running; default is 2}
\item{verbose}{Deprecated; use verbosity instead}
\item{show_progress}{Deprecated; use verbosity instead}
}
\value{
A ggplot object
}
\description{
Plot estimated and fitted model parameters
}
\examples{
\donttest{
vst_out <- vst(pbmc, return_gene_attr = TRUE)
plot_model_pars(vst_out)
}
}
|