File: MD5

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r-cran-seqinr 3.4-5-2
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8779c4725ac84bff043854cea8005e2a *DESCRIPTION
6376fe6e77b9c49dbb5d6d26434834ed *NAMESPACE
d2ff218f55f61084bf070ee2b5341928 *NEWS
dd981a8bc19bea5e91c256f75ea8b5c9 *R/AAstat.R
7175d6708d717dca65176df83a41f9bd *R/ClassSeq.R
1e91dc3520dc9fd00e6e78da768c4b2e *R/GC.R
633531e5d119f908e2ed61c2063515d9 *R/PI.R
053a0187d0fb50f067967b45e2cbbcac *R/R_socket.R
d0fddeea0d82c2ce6be501fb845e68db *R/acnucclose.R
b899f1793668edaf00f2fc34bf3f8156 *R/acnucopen.R
6c231aebdc9d78beed8b128ca9497b3a *R/al2bp.R
f1c181a43cd515afc40912c23d57b48f *R/allistranks.R
e8ca816b2688ccdff894fe7484a5219b *R/amb.R
dcb9fdf6787b486e715eb32fcad782f9 *R/as.alignment.R
23dd9489492a03efabb30f8b942db543 *R/as.matrix.alignment.R
ef4ecfea9f3ba3e7fa6d4d22d3fc5c87 *R/autosocket.R
79270da6013f8c0da557d49df4c6fb93 *R/baselineabif.R
5703b2a2d40aff5cdb4fe98e03b1806c *R/bma.R
e8d88ddfefb2671a94f95c53e8c22c57 *R/cai.R
5f15ab5f63f71b752039ca1ced27a28b *R/choosebank.R
812ffd4010c7035837d2fd0d4db290f5 *R/circle.R
d8fab11dbb02bd793828704fb6903c51 *R/clfcd.R
b25f52a33ccb2f6f66fcb30e1e74680e *R/clientid.R
00bc719de0ccf65560a86ec794b760fe *R/closebank.R
f6f6dc5c585d71ee9e664db3d9e9453a *R/col2alpha.R
a54741d7bafe66fe670b789236cc22fa *R/comp.R
26ff4107c8fc92f96020fc8551688aa9 *R/consensus.R
70903c3ea1da6bcb6d2b0b77960f86a7 *R/count.R
3d5c97c10129de81da8b0b7c8006bdf3 *R/countfreelists.R
e354a7785d3f515d4311ddf75b54fc71 *R/countsubseqs.R
170a8077be5e66cd08ca1fba10209d24 *R/db.growth.R
1394355049f1bb135f481a50508994d5 *R/dia.bactgensize.R
d47075fe840da6f000af83ece511af2c *R/dist.alignment.R
3dc6f329eea0d8db614bfb6ded99c056 *R/dotPlot.R
35bf83b40232e876bb2e619749056162 *R/dotchart.uco.R
e7c8d78234ac7a398766943c2b179d91 *R/draw.oriloc.R
c5d3818fb836288a75c41ce6dd7c19e0 *R/draw.rearranged.oriloc.R
4f7b1e44bac0700d4d313876c1f19639 *R/draw.recstat.R
c83bc7ce2217e6f215b18376e72b650f *R/extract.breakpoints.R
b89dfd6ad6584d989cedc6960af214ec *R/extractseqs.R
7cbf5e8324af34371d3917496bc23dfa *R/fastacc.R
e74c8ba0da1fb405e080065261728f9c *R/gb2fasta.R
2d5372f6f01f90ea00be0599d686cfbc *R/gbk2g2.R
5c25127bfa87a9c0ae5cc0303e2d5760 *R/gbk2g2.euk.R
56a71d800186da36f5817641353d1bb3 *R/get.ncbi.R
97394927a67bc9051c6c2d897e2b4c8c *R/getAnnot.R
06ee37a0f5cdfc6ac972635c90a4ca2d *R/getFrag.R
6f45dd26e77c33f1a68b30394df40537 *R/getKeyword.R
414a50f37334fdf5c20e32de06a44c62 *R/getLength.R
bd6ff768d092ad6573c2b719c7d2399d *R/getLocation.R
c4b6fc3ccb3bcdec62bdebced9263660 *R/getName.R
0a36d73d9d155c5b7a3704ab73bee883 *R/getSequence.R
5f3525ffdeb401675378531efa06094b *R/getTrans.R
b582f5a822b09825f9f4dabc2e220cc4 *R/getType.R
77de234689104f105b66bdaf4ebbd886 *R/getlistrank.R
31a6e8b2f9594596d677b57f3906b677 *R/getliststate.R
e2af7c88e0e7c42cbb6e6208aa6364d8 *R/gfrag.R
1b9650fd96f5cbce29b1b79015ad99c5 *R/ghelp.R
ade42b1d2a6034de880e6676cf1f5da5 *R/isenum.R
8834450f10c4d06cc047966749dda721 *R/kaks.R
106b5a8d04534e8441081bdadc23959f *R/knowndbs.R
3ea277d7f032f1d31004cda14e46fbab *R/lseqinr.R
6e4f1e677e5d870e8c5b3bf57fa25b91 *R/modifylist.R
a3da681f32a58026a42e57d6a5baa03c *R/move.R
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94847d1d09e2ea265da9f736f732487a *R/parser.socket.R
c0fd92be7137f64874e66a0d3e3f713d *R/peakabif.R
daadbfebc84beef3d1e3fa1b511d1d82 *R/permutation.R
501e668ee6fcdaa032058914567191d4 *R/plot.SeqAcnucWeb.R
2869a2eb6a2c8a3dcf8d70cdb136d6c4 *R/plotPanels.R
8d5d7797b913d7eb039c5e2a125ff5ec *R/plotabif.R
edc4cc62d55ced70244d2db9bb71b815 *R/plotladder.R
ae47cf06593fc89cb8a105dfb69b6e93 *R/pmw.R
6e740c9d557d3f42fd31ce5ba3067a9c *R/prepgetannots.R
0e735cb30f6e370e4e494ad9dcba14d1 *R/prettyseq.R
cb9f8a17e0bdafa1fe7b8a4584eb8ab0 *R/query.r
126d5ade572e95511b2b66b7189807d9 *R/quitacnuc.R
5c829cc5536f04c051d686cf1b553859 *R/read.abif.R
33fa1c3e2f5f20e0f3c75792269e1e66 *R/read.alignment.R
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8a46bbfddc96af2244eb21d7fa7157b6 *R/readBins.R
7fa1d45bb89c1229cd494c007ce94d5f *R/readPanels.R
5d684c3f0beda26fa6e1d9bfd063680d *R/readfirstrec.R
12b4af8afe3c4af7b65070201db7082c *R/readsmj.R
76ecc72faa60145380275581474f98dc *R/rearranged.oriloc.R
98f98cdd0cb535cce91bad01c47192d0 *R/recstat.R
e27d133de947ce3880ed4e300c676a84 *R/residuecount.R
ca1c94e97783b4a68a30df6ab1cad560 *R/reverse.align.R
6b928f22960b6446a41f5b305555979c *R/rho.R
8f025ccd0924af255f041a917f7a3787 *R/rot13.R
50393c64f02c89723db803c22366329f *R/s2n.R
be01cbe2fc2ee4b08079bc7b8b396e01 *R/savelist.R
848e8f8bd67e29e39e1e46a026d003b4 *R/setlistname.R
29e473837b15cb94cb62419eab7a93e5 *R/splitseq.R
b081eb607b9782f99653e50cfb1e9d3f *R/stresc.R
b06cb8115a0f2f568cbc8946908a52ee *R/stutterabif.R
46ac2ee30965434e3687b259691a69cd *R/swap.R
77ea763a58167e3de49c1ad98babcc3c *R/synonymous.R
478b66c88728d9d18b394b4868b00f58 *R/tablecode.R
0134ec6749f84bc8aa7596850f784316 *R/test.co.recstat.R
ab86b9a3f2568f102986b6fb93a545bc *R/test.li.recstat.R
a3350838cdb114e256e2441990c0dfa1 *R/translate.R
db37533bde4cb23943363ec1649c395b *R/trimSpace.R
8e180cdee361f0de8b4854c0428eb166 *R/uco.R
3c550b2b0e6b7f012c5884ec97a5f2b3 *R/util.R
5c6a726318b034002ec8478005d0ec54 *R/where.is.this.acc.R
4e4e196dab3926727e78e6af44616ebd *R/words.R
a56eb0ff10c2eb36431885fa78e0fdb8 *R/words.pos.R
204830bfeeef59878373d10b947e6fc2 *R/write.fasta.R
6daeda4870b681a9def5e87b0c2a692c *R/zscore.R
033d80a8adda07cac603ce6b611d608f *data/AnoukResult.RData
2b0a3f963e0280158c600e0a835c68f0 *data/ECH.RData
1865b10477052ef2fb80a197be5cef8b *data/EXP.RData
c9817ee41aba54c1210233bd7c545e9e *data/JLO.RData
62e519367c3f3cf6be1d57af71bb1d31 *data/SEQINR.UTIL.RData
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2257b0c567b40276e9e210a5c8af8b3c *data/aaindex.RData
8acad0cc4d855222639ae95acbcd6123 *data/caitab.RData
060289fc3bc5f4625f08d3b957510f95 *data/chargaff.RData
6cce89d032b04f46f559fd5bbb27af3d *data/clustal.RData
831178c5bec48693c19f47db9f513546 *data/datalist
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da07577d8b3ea0dc2cb2c8e0f368b74b *data/ec999.RData
eba93070a5d7fb24a834da2218927e55 *data/fasta.RData
a4a6a8e82355a655d37391ef30b42203 *data/gcO2.rda
d8e3c74857a632fb70f87d494b808067 *data/gcT.rda
47ba374c4260e17e6976b055a605ba37 *data/gs500liz.RData
9266be8ec69dce388b8f44140f893db7 *data/identifiler.RData
74030fda1c4203ba18b3969e2b106f55 *data/kaksTorture.RData
3f255b9c54dbbf89586ce62076237ff8 *data/m16j.RData
ea792211e964f9b87891dc5bf10a2687 *data/mase.RData
ad734da5e5cb63a40d4b91559a0528cd *data/msf.RData
8143331b64f077f8b75754ca2103eb94 *data/pK.RData
140a09b00e84b2d8c3e07c63aa1d340e *data/phylip.RData
cdbd5b6634836c95a8a103bb9e2fdc33 *data/prochlo.RData
139282991e6521aa3106295a165829dc *data/revaligntest.RData
62e519367c3f3cf6be1d57af71bb1d31 *data/sysdata.rda
25253e4bac590ba3844a7967db019c32 *data/toyaa.RData
74d31c280517b21cb57f291ea490eea4 *data/toycodon.RData
bba3aacde26c6235c5725427af6cc482 *data/waterabs.RData
df797f2cdf697b330d68ac8194db7a53 *inst/CITATION
79179e6254bc1f46eb07303d85aa084e *inst/abif/1_0000206138_C01_005.fsa
45ad0f3fea5bf2143fc74a810a519945 *inst/abif/1_FAC321_0000205983_B02_004.fsa
831e4bb52c0b2ab78a9246dca7e67d58 *inst/abif/2_0000206138_C01_005.fsa
88860b1ef18d69b54837a85b916ae697 *inst/abif/2_FAC321_0000205983_B02_004.fsa
a16fac50a201d4b38ec3204c8737df45 *inst/abif/AmpFLSTR_Bins_v1.txt
4e0288d7d9d76672c7ff8ff0d05fe0ad *inst/abif/AmpFLSTR_Panels_v1.txt
008e815eb4a7a94a46461d265c64ae78 *inst/abif/NGM_Bins.txt
9f64398f12a862adadc4ddea9374e5bf *inst/abif/NGM_Pa.txt
48281c9d741c32bfddc8ae63aefc8df0 *inst/abif/Promega_Bins_v1.txt
13d0415163c2b968875073df7abecc06 *inst/abif/Promega_Panels_v1.txt
118cf8e86dbab633734283bb8968aebd *inst/abif/Prototype_PowerPlex_EP01_Bins.txt
480c7bcaed36937e62d611aaea8845e7 *inst/abif/Prototype_PowerPlex_EP01_Pa.txt
115afc50e7118a18a18bb7078eb22e53 *inst/abif/samplefsa2ps.fsa
a162dc1c3b4461c33c1644320e84cea5 *inst/sequences/Anouk.fasta
b0706a24d5abe1df7af2c8038ca7bebb *inst/sequences/DarrenObbard.fasta
76b03fc33829fb97bd5d1a04d283a6ab *inst/sequences/ECOUNC.fsa
b3d34cd481e4f6bf843b78c5e17c079f *inst/sequences/UBIQUITIN.mase
ca11c1c6cecbb254b394ee24bff10d17 *inst/sequences/ame1.gbk
ce707593c6e9f43ac3f77f2276b2fc73 *inst/sequences/bb.acc
3ef93a6e32d1929ff3ee0abdb5ac96dd *inst/sequences/bb.kwd
8eb44c1f8c1e1b2d40bab5106ec657c3 *inst/sequences/bb.mne
cd5b7b52fe1bd7a49107cfe7a4fa1311 *inst/sequences/bb.sp
48ba932397d95293cf4b497773e83723 *inst/sequences/bordetella.fasta
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d14166d4b9592dedfb53124ea81795a7 *inst/sequences/ct.predict
d0ff0477e562d8aa3c0979a4a33a2226 *inst/sequences/ecolicgpe5.fasta
6dc7e60dac18296f9e1d719f39f03b84 *inst/sequences/gopher.fasta
1d5bd50d5ff345e08cb37a8689303e0c *inst/sequences/gopher.names
cf31afbaea651a30e8f2b530483830bb *inst/sequences/hannah.txt
e03266d6ed9efa1dad9755a88e024565 *inst/sequences/humanMito.fasta
c56d8223a10995c70a6f965e46a06b44 *inst/sequences/input.dat
f82ee7968ac65ab690bdc1cfd10f055d *inst/sequences/input.out
dc806adb55559a8486727292e56d58cf *inst/sequences/kaks-torture.fasta
1b714fae98378e5142d7ec658127ef36 *inst/sequences/legacy.fasta
d84b82c9cbc37133cb4d1f4e3c651878 *inst/sequences/louse.fasta
49138a950cfee1b2ebce2f95e6c4569c *inst/sequences/louse.names
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7e22ca9211af371ebdbc483acec22bb7 *inst/sequences/ortho.fasta
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1e41a172ef6a1eb538aa4471da6d2ac9 *inst/sequences/seqAA.fasta
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717a230459ee63b4bf752db0af85ee7d *inst/sequences/someORF.fsa
05d2cec3375c0599b1872a0697f40b91 *inst/sequences/test.aln
b8cf915491772d56bfd779c64156c424 *inst/sequences/test.mase
2dc0b9b12f1f303cfb7cb6e88418718a *inst/sequences/test.msf
e775cbe3a62d9495d643758a7a43c9ab *inst/sequences/test.phylip
5bc8c88f5db8076d8d036c4ca91e1562 *man/AAstat.Rd
98fa02321f2d444eb742e45c61ab0ea5 *man/AnoukResult.Rd
8d735c4f859717374f61bd4b8094060c *man/ECH.Rd
b477890899d95267de5249664a241350 *man/EXP.Rd
e17700422fa641e87555e16227013fb3 *man/GC.Rd
aeae19d233c41f0aab08ffa706febc9e *man/JLO.Rd
4e32511953712c0ad3a6cecc9f79d434 *man/SEQINR.UTIL.Rd
00d077cdf4651fec354a3cc4f60f026d *man/SeqAcnucWeb.Rd
fdda8a20d94b93b4c9dd587763e8ea96 *man/SeqFastaAA.Rd
78e79e0e28cd1c507275a270f2a877e4 *man/SeqFastadna.Rd
77e0cd2af40b5f07142a00165561113b *man/SeqFrag.Rd
0291681ef4c61b5f969911c02e1d9c3c *man/a.Rd
204a173a6e1f8d01d680df4962e9297c *man/aaa.Rd
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cf17c6b4556bffdbc7b2cc56bf13298b *man/aaindex.Rd
149dacde36bf3d2b4f8cc7a94a39c1db *man/acnucopen.Rd
4472367be41364ac125ff53890311842 *man/al2bp.Rd
91ce2a2d56194034c02d02720077c7a1 *man/alllistranks.Rd
44ea7c5018d8cb72a5c9221244d4ed47 *man/amb.Rd
37cd629598f0292ec8901b1880636d4d *man/as.alignment.Rd
84e9ef1f9c61bc160a3e4a369879bfd7 *man/as.matrix.alignment.Rd
5b36d14adaa4dfaee6e59e6640ef722f *man/autosocket.Rd
441038ae274e763b08fb919baff18c33 *man/baselineabif.Rd
0066bc893874ff25f429c9fc607555ec *man/bma.Rd
1720c015d702002313d2404bf34dd746 *man/c2s.Rd
fd3a107f68cc6649b15a7d32e5e3745a *man/cai.Rd
46074b10c09034f3d482fbe99217d9fb *man/caitab.Rd
0b3e3b1533ec40155cce9dbde1a6a93f *man/chargaff.Rd
fd9087898a7e4ce52e8c2852980f6310 *man/choosebank.Rd
fd469bea7adfc60d7730d80af5c51db8 *man/circle.Rd
ab61ec20db72ccfaa6cdc78e3bb04ed4 *man/closebank.Rd
ad182b206f059b71eafd4ebf8d5404d4 *man/clustal.Rd
06bae4306ad66fb9d4d99098468345da *man/col2alpha.Rd
061c6f67f659389d8a8c41249f080112 *man/comp.Rd
9112a5426f73b6d49e9adcce73b0ece0 *man/computePI.Rd
493de05da072a143c93b18139de195ff *man/consensus.Rd
3d65fbcb5620d562c5e02e2de950b487 *man/count.Rd
fcf4e9b4e4f667a220340e32bf3e8394 *man/countfreelists.Rd
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