File: JLO.Rd

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\name{JLO}
\alias{JLO}
\docType{data}
\title{Forensic Genetic Profile Raw Data}
\description{
  This is an example of raw data for a human STR genetic profile at 16 loci
  (\emph{viz.} D8S1179, D21S11, D7S820, CSF1PO, D3S1358, TH01, D13S317, D16S539,
  D2S1338, D19S433, vWA, TPOX, D18S51, Amelogenin, D5S818, FGA) which
  are commonly used in forensic sciences for individual identifications.
}
\usage{data(JLO)}
\format{
  A list with 3 components.
  \describe{
    \item{Header}{a list corresponding to the header in the ABIF file}
    \item{Directory}{a data.frame corresponding to the Directory in the ABIF file}
    \item{Data}{a list with all raw data in the ABIF file.}
  }
}
\details{
  This dataset is the expected result when reading the file
  \code{2_FAC321_0000205983_B02_004.fsa} with the
  function \code{\link{read.abif}}. This dataset is used for
  the quality check of this function.
}
\source{
  The DNA source is from the author so that there are no privacy concern.
  Data were kindly provided by the INPS (Institut National de Police Scientifique)
  which is the national forensic sciences institute in France. Experiments
  were done at the LPS (Laboratoire de Police Scientifique de Lyon) in 2008.
}
\references{
  \code{citation("seqinr")}

  Anonymous (2006) Applied Biosystem Genetic Analysis Data File Format.
  Available at \url{http://www.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf}.
  Last visited on 03-NOV-2008.
}
\author{J.R. Lobry}
\seealso{
  function \code{\link{read.abif}} to import files in ABIF format, 
  data \code{\link{gs500liz}} for internal size standards,
  data \code{\link{ECH}} for the corresponding allelic ladder,
  data \code{\link{identifiler}} for allele names in the allelic ladder.
}
\examples{
data(JLO)
}