1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365
|
#' Create a memory cache object
#'
#' A memory cache object is a key-value store that saves the values in an
#' environment. Objects can be stored and retrieved using the `get()` and
#' `set()` methods. Objects are automatically pruned from the cache
#' according to the parameters `max_size`, `max_age`, `max_n`,
#' and `evict`.
#'
#' In a `MemoryCache`, R objects are stored directly in the cache; they are
#' not *not* serialized before being stored in the cache. This contrasts
#' with other cache types, like [diskCache()], where objects are
#' serialized, and the serialized object is cached. This can result in some
#' differences of behavior. For example, as long as an object is stored in a
#' MemoryCache, it will not be garbage collected.
#'
#'
#' @section Missing keys:
#' The `missing` and `exec_missing` parameters controls what happens
#' when `get()` is called with a key that is not in the cache (a cache
#' miss). The default behavior is to return a [key_missing()]
#' object. This is a *sentinel value* that indicates that the key was not
#' present in the cache. You can test if the returned value represents a
#' missing key by using the [is.key_missing()] function. You can
#' also have `get()` return a different sentinel value, like `NULL`.
#' If you want to throw an error on a cache miss, you can do so by providing a
#' function for `missing` that takes one argument, the key, and also use
#' `exec_missing=TRUE`.
#'
#' When the cache is created, you can supply a value for `missing`, which
#' sets the default value to be returned for missing values. It can also be
#' overridden when `get()` is called, by supplying a `missing`
#' argument. For example, if you use `cache$get("mykey", missing =
#' NULL)`, it will return `NULL` if the key is not in the cache.
#'
#' If your cache is configured so that `get()` returns a sentinel value
#' to represent a cache miss, then `set` will also not allow you to store
#' the sentinel value in the cache. It will throw an error if you attempt to
#' do so.
#'
#' Instead of returning the same sentinel value each time there is cache miss,
#' the cache can execute a function each time `get()` encounters missing
#' key. If the function returns a value, then `get()` will in turn return
#' that value. However, a more common use is for the function to throw an
#' error. If an error is thrown, then `get()` will not return a value.
#'
#' To do this, pass a one-argument function to `missing`, and use
#' `exec_missing=TRUE`. For example, if you want to throw an error that
#' prints the missing key, you could do this:
#'
#' \preformatted{
#' diskCache(
#' missing = function(key) {
#' stop("Attempted to get missing key: ", key)
#' },
#' exec_missing = TRUE
#' )
#' }
#'
#' If you use this, the code that calls `get()` should be wrapped with
#' [tryCatch()] to gracefully handle missing keys.
#'
#' @section Cache pruning:
#'
#' Cache pruning occurs when `set()` is called, or it can be invoked
#' manually by calling `prune()`.
#'
#' When a pruning occurs, if there are any objects that are older than
#' `max_age`, they will be removed.
#'
#' The `max_size` and `max_n` parameters are applied to the cache as
#' a whole, in contrast to `max_age`, which is applied to each object
#' individually.
#'
#' If the number of objects in the cache exceeds `max_n`, then objects
#' will be removed from the cache according to the eviction policy, which is
#' set with the `evict` parameter. Objects will be removed so that the
#' number of items is `max_n`.
#'
#' If the size of the objects in the cache exceeds `max_size`, then
#' objects will be removed from the cache. Objects will be removed from the
#' cache so that the total size remains under `max_size`. Note that the
#' size is calculated using the size of the files, not the size of disk space
#' used by the files --- these two values can differ because of files are
#' stored in blocks on disk. For example, if the block size is 4096 bytes,
#' then a file that is one byte in size will take 4096 bytes on disk.
#'
#' Another time that objects can be removed from the cache is when
#' `get()` is called. If the target object is older than `max_age`,
#' it will be removed and the cache will report it as a missing value.
#'
#' @section Eviction policies:
#'
#' If `max_n` or `max_size` are used, then objects will be removed
#' from the cache according to an eviction policy. The available eviction
#' policies are:
#'
#' \describe{
#' \item{`"lru"`}{
#' Least Recently Used. The least recently used objects will be removed.
#' This uses the filesystem's atime property. Some filesystems do not
#' support atime, or have a very low atime resolution. The DiskCache will
#' check for atime support, and if the filesystem does not support atime,
#' a warning will be issued and the "fifo" policy will be used instead.
#' }
#' \item{`"fifo"`}{
#' First-in-first-out. The oldest objects will be removed.
#' }
#' }
#'
#' @section Methods:
#'
#' A disk cache object has the following methods:
#'
#' \describe{
#' \item{`get(key, missing, exec_missing)`}{
#' Returns the value associated with `key`. If the key is not in the
#' cache, then it returns the value specified by `missing` or,
#' `missing` is a function and `exec_missing=TRUE`, then
#' executes `missing`. The function can throw an error or return the
#' value. If either of these parameters are specified here, then they
#' will override the defaults that were set when the DiskCache object was
#' created. See section Missing Keys for more information.
#' }
#' \item{`set(key, value)`}{
#' Stores the `key`-`value` pair in the cache.
#' }
#' \item{`exists(key)`}{
#' Returns `TRUE` if the cache contains the key, otherwise
#' `FALSE`.
#' }
#' \item{`size()`}{
#' Returns the number of items currently in the cache.
#' }
#' \item{`keys()`}{
#' Returns a character vector of all keys currently in the cache.
#' }
#' \item{`reset()`}{
#' Clears all objects from the cache.
#' }
#' \item{`destroy()`}{
#' Clears all objects in the cache, and removes the cache directory from
#' disk.
#' }
#' \item{`prune()`}{
#' Prunes the cache, using the parameters specified by `max_size`,
#' `max_age`, `max_n`, and `evict`.
#' }
#' }
#'
#' @inheritParams diskCache
#'
#' @export
memoryCache <- function(
max_size = 10 * 1024 ^ 2,
max_age = Inf,
max_n = Inf,
evict = c("lru", "fifo"),
missing = key_missing(),
exec_missing = FALSE,
logfile = NULL)
{
MemoryCache$new(max_size, max_age, max_n, evict, missing, exec_missing, logfile)
}
MemoryCache <- R6Class("MemoryCache",
public = list(
initialize = function(
max_size = 10 * 1024 ^ 2,
max_age = Inf,
max_n = Inf,
evict = c("lru", "fifo"),
missing = key_missing(),
exec_missing = FALSE,
logfile = NULL)
{
if (exec_missing && (!is.function(missing) || length(formals(missing)) == 0)) {
stop("When `exec_missing` is true, `missing` must be a function that takes one argument.")
}
if (!is.numeric(max_size)) stop("max_size must be a number. Use `Inf` for no limit.")
if (!is.numeric(max_age)) stop("max_age must be a number. Use `Inf` for no limit.")
if (!is.numeric(max_n)) stop("max_n must be a number. Use `Inf` for no limit.")
private$cache <- fastmap()
private$max_size <- max_size
private$max_age <- max_age
private$max_n <- max_n
private$evict <- match.arg(evict)
private$missing <- missing
private$exec_missing <- exec_missing
private$logfile <- logfile
},
get = function(key, missing = private$missing, exec_missing = private$exec_missing) {
private$log(paste0('get: key "', key, '"'))
validate_key(key)
private$maybe_prune_single(key)
if (!self$exists(key)) {
private$log(paste0('get: key "', key, '" is missing'))
if (exec_missing) {
if (!is.function(missing) || length(formals(missing)) == 0) {
stop("When `exec_missing` is true, `missing` must be a function that takes one argument.")
}
return(missing(key))
} else {
return(missing)
}
}
private$log(paste0('get: key "', key, '" found'))
value <- private$cache$get(key)$value
value
},
set = function(key, value) {
private$log(paste0('set: key "', key, '"'))
validate_key(key)
time <- as.numeric(Sys.time())
# Only record size if we're actually using max_size for pruning.
if (is.finite(private$max_size)) {
# Reported size is rough! See ?object.size.
size <- as.numeric(object.size(value))
} else {
size <- NULL
}
private$cache$set(key, list(
key = key,
value = value,
size = size,
mtime = time,
atime = time
))
self$prune()
invisible(self)
},
exists = function(key) {
validate_key(key)
private$cache$has(key)
},
keys = function() {
private$cache$keys()
},
remove = function(key) {
private$log(paste0('remove: key "', key, '"'))
validate_key(key)
private$cache$remove(key)
invisible(self)
},
reset = function() {
private$log(paste0('reset'))
private$cache$reset()
invisible(self)
},
prune = function() {
private$log(paste0('prune'))
info <- private$object_info()
# 1. Remove any objects where the age exceeds max age.
if (is.finite(private$max_age)) {
time <- as.numeric(Sys.time())
timediff <- time - info$mtime
rm_idx <- timediff > private$max_age
if (any(rm_idx)) {
private$log(paste0("prune max_age: Removing ", paste(info$key[rm_idx], collapse = ", ")))
private$cache$remove(info$key[rm_idx])
info <- info[!rm_idx, ]
}
}
# Sort objects by priority, according to eviction policy. The sorting is
# done in a function which can be called multiple times but only does
# the work the first time.
info_is_sorted <- FALSE
ensure_info_is_sorted <- function() {
if (info_is_sorted) return()
if (private$evict == "lru") {
info <<- info[order(info$atime, decreasing = TRUE), ]
} else if (private$evict == "fifo") {
info <<- info[order(info$mtime, decreasing = TRUE), ]
} else {
stop('Unknown eviction policy "', private$evict, '"')
}
info_is_sorted <<- TRUE
}
# 2. Remove objects if there are too many.
if (is.finite(private$max_n) && nrow(info) > private$max_n) {
ensure_info_is_sorted()
rm_idx <- seq_len(nrow(info)) > private$max_n
private$log(paste0("prune max_n: Removing ", paste(info$key[rm_idx], collapse = ", ")))
private$cache$remove(info$key[rm_idx])
info <- info[!rm_idx, ]
}
# 3. Remove objects if cache is too large.
if (is.finite(private$max_size) && sum(info$size) > private$max_size) {
ensure_info_is_sorted()
cum_size <- cumsum(info$size)
rm_idx <- cum_size > private$max_size
private$log(paste0("prune max_size: Removing ", paste(info$key[rm_idx], collapse = ", ")))
private$cache$remove(info$key[rm_idx])
info <- info[!rm_idx, ]
}
invisible(self)
},
size = function() {
length(self$keys())
}
),
private = list(
cache = NULL,
max_age = NULL,
max_size = NULL,
max_n = NULL,
evict = NULL,
missing = NULL,
exec_missing = NULL,
logfile = NULL,
# Prunes a single object if it exceeds max_age. If the object does not
# exceed max_age, or if the object doesn't exist, do nothing.
maybe_prune_single = function(key) {
if (!is.finite(private$max_age)) return()
obj <- private$cache$get(key)
if (is.null(obj)) return()
timediff <- as.numeric(Sys.time()) - obj$mtime
if (timediff > private$max_age) {
private$log(paste0("pruning single object exceeding max_age: Removing ", key))
private$cache$remove(key)
}
},
object_info = function() {
keys <- private$cache$keys()
data.frame(
key = keys,
size = vapply(keys, function(key) private$cache$get(key)$size, 0),
mtime = vapply(keys, function(key) private$cache$get(key)$mtime, 0),
atime = vapply(keys, function(key) private$cache$get(key)$atime, 0),
stringsAsFactors = FALSE
)
},
log = function(text) {
if (is.null(private$logfile)) return()
text <- paste0(format(Sys.time(), "[%Y-%m-%d %H:%M:%OS3] MemoryCache "), text)
writeLines(text, private$logfile)
}
)
)
|