1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
|
options(sd_num_thread=2)
## amatch: Optimal String Alignment
# tests against cases that used to segfault when we did not check
# NULL cases.
expect_error(amatch("a","b",nthread=1:4))
expect_error(amatch("a","b",nthread="foo"))
expect_error(amatch("a","b",nthread=integer(0)))
expect_error(amatch("a","b",nthread=NULL))
## simple test and multiple edge cases
expect_equal(amatch("aa",c("ba","bb"), method="osa",maxDist=1L), 1L)
expect_equal(amatch("aa",c("bb","bb"), method="osa",maxDist=1L), NA_integer_)
expect_equal(amatch("aa",c("bbb"), method="osa",maxDist=2L), NA_integer_)
expect_equal(amatch("bbb",c("aa"), method="osa",maxDist=2L), NA_integer_)
expect_equal(amatch("","", method="osa"), 1L)
expect_equal(amatch(NA,"a", method="osa"), NA_integer_)
expect_equal(amatch(NA,"a", method="osa", nomatch=0L),0L)
expect_equal(amatch(NA,NA, method="osa"), 1L)
expect_equal(amatch(NA,NA, method="osa",matchNA=FALSE), NA_integer_)
expect_equal(amatch(NA,NA, method="osa",matchNA=FALSE, nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="osa",matchNA=FALSE, nomatch=7L), 7L)
expect_equal(amatch("aa","bb", method="osa",maxDist=1), NA_integer_)
expect_equal(amatch("aa","bb", method="osa",maxDist=1), NA_integer_)
expect_equal(amatch(c("m","fem"),c("male","female"),method="osa",maxDist=Inf), c(1,2))
## amatch: Damerau-Levenshtein
## simple test and multiple edge cases
expect_equal(amatch("aa", c("ba","bb"), method="dl",maxDist=1L), 1L)
expect_equal(amatch("aa",c("bb","bb"), method="dl",maxDist=1L), NA_integer_)
expect_equal(amatch("aa",c("bbb"), method="dl",maxDist=2L), NA_integer_)
expect_equal(amatch("bbb",c("aa"), method="dl",maxDist=2L), NA_integer_)
expect_equal(amatch("","", method="dl"), 1L)
expect_equal(amatch(NA,"a", method="dl"), NA_integer_)
expect_equal(amatch(NA,"a", method="dl",nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="dl"), 1L)
expect_equal(amatch(NA,NA, method="dl",matchNA=FALSE), NA_integer_)
expect_equal(amatch(NA,NA, method="dl",matchNA=FALSE,nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="dl",matchNA=FALSE,nomatch=7L), 7L)
expect_equal(amatch("aa","bb", method="dl",maxDist=1), NA_integer_)
expect_equal(amatch("aa","bb", method="dl",maxDist=1), NA_integer_)
expect_equal(amatch(c("m","fem"),c("male","female"),method="dl",maxDist=Inf), c(1,2))
## amatch: Hamming
## simple test and multiple edge cases
expect_equal(amatch("aa", c("ba","bb"), method="hamming",maxDist=1L), 1L)
expect_equal(amatch("aa",c("bb","bb"), method="hamming",maxDist=1L), NA_integer_)
expect_equal(amatch(NA,c(NA,NA),method="hamming"),1L)
expect_equal(amatch("","", method="hamming"), 1L)
expect_equal(amatch(NA,"a", method="hamming"), NA_integer_)
expect_equal(amatch(NA,"a", method="hamming",nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="hamming"), 1L)
expect_equal(amatch(NA,NA, method="hamming",matchNA=FALSE), NA_integer_)
expect_equal(amatch(NA,NA, method="hamming",matchNA=FALSE,nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="hamming",matchNA=FALSE,nomatch=7L), 7L)
expect_equal(amatch("aa","bb", method="hamming",maxDist=1), NA_integer_)
## amatch: Jaro and Jaro-Winkler
## simple test and multiple edge cases
expect_equal(amatch("aa", c("ba","bb"), method="jw",maxDist=1L), 1L)
expect_equal(amatch("aa",c("bb","bb"), method="jw",maxDist=0.5), NA_integer_)
expect_equal(amatch(NA,c(NA,NA),method="jw"),1L)
expect_equal(amatch("","", method="jw"), 1L)
expect_equal(amatch(NA,"a", method="jw"), NA_integer_)
expect_equal(amatch(NA,"a", method="jw",nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="jw"), 1L)
expect_equal(amatch(NA,NA, method="jw",matchNA=FALSE), NA_integer_)
expect_equal(amatch(NA,NA, method="jw",matchNA=FALSE,nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="jw",matchNA=FALSE,nomatch=7L), 7L)
expect_equal(amatch(c("m","fem"),c("male","female"),method="jw",maxDist=Inf), c(1,2))
## amatch: Longest Common Substring
## simple test and multiple edge cases
expect_equal(amatch("aa", c("ba","bb"), method="lcs",maxDist=2L), 1L)
expect_equal(amatch("aa",c("bb","bb"), method="lcs",maxDist=1L), NA_integer_)
expect_equal(amatch("aa",c("bbb"), method="lcs",maxDist=2L), NA_integer_)
expect_equal(amatch("bbb",c("aa"), method="lcs",maxDist=2L), NA_integer_)
expect_equal(amatch(NA,c(NA,NA),method="lcs"),1L)
expect_equal(amatch("","", method="lcs"), 1L)
expect_equal(amatch(NA,"a", method="lcs"), NA_integer_)
expect_equal(amatch(NA,"a", method="lcs",nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="lcs"), 1L)
expect_equal(amatch(NA,NA, method="lcs",matchNA=FALSE), NA_integer_)
expect_equal(amatch(NA,NA, method="lcs",matchNA=FALSE,nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="lcs",matchNA=FALSE,nomatch=7L), 7L)
## amatch: Levenshtein
## simple test and multiple edge cases
expect_equal(amatch("aa", c("ba","bb"), method="lv",maxDist=1L), 1L)
expect_equal(amatch("aa",c("bb","bb"), method="lv",maxDist=1L), NA_integer_)
expect_equal(amatch("aa",c("bbb"), method="lv",maxDist=2L), NA_integer_)
expect_equal(amatch("bbb",c("aa"), method="lv",maxDist=2L), NA_integer_)
expect_equal(amatch(NA,c(NA,NA),method="lv"),1L)
expect_equal(amatch("","", method="lv"), 1L)
expect_equal(amatch(NA,"a", method="lv"), NA_integer_)
expect_equal(amatch(NA,"a", method="lv",nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="lv"), 1L)
expect_equal(amatch(NA,NA, method="lv",matchNA=FALSE), NA_integer_)
expect_equal(amatch(NA,NA, method="lv",matchNA=FALSE,nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="lv",matchNA=FALSE,nomatch=7L), 7L)
expect_equal(amatch(c("m","fem"),c("male","female"),method="lv",maxDist=Inf), c(1,2))
## amatch: qgrams
## simple test and multiple edge cases
expect_equal(amatch("aa", c("ba","bb"), method="qgram",maxDist=2), 1L)
expect_equal(amatch("aa",c("bb","bb"), method="qgram",maxDist=1L), NA_integer_)
expect_equal(amatch(NA,c(NA,NA),method="qgram"),1L)
expect_equal(amatch("","", method="qgram", q=0), 1L)
expect_equal(amatch(NA,"a", method="qgram"), NA_integer_)
expect_equal(amatch(NA,"a", method="qgram",nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="qgram"), 1L)
expect_equal(amatch(NA,NA, method="qgram",matchNA=FALSE), NA_integer_)
expect_equal(amatch(NA,NA, method="qgram",matchNA=FALSE,nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="qgram",matchNA=FALSE,nomatch=7L), 7L)
# bug reported by Robert Carlson
expect_equal(
amatch("600 EXAMPLE AVE NJ 8629",
c("2100 EXAMPLE AVE NJ 8619", "600 EXAMPLE AVE NJ 8629"), method="jaccard")
, 2L)
## amatch: Soundex
## simple test and multiple edge cases
expect_equal(amatch("smith", c("smyth","smelt"), method="soundex"), 1L)
expect_equal(amatch("smith",c("bb","bb"), method="soundex"), NA_integer_)
expect_equal(amatch("smith",c("whashington"), method="soundex"), NA_integer_)
expect_equal(amatch("washington",c("smith"), method="soundex"), NA_integer_)
expect_equal(amatch(NA,c(NA,NA),method="soundex"),1L)
expect_equal(amatch("","", method="soundex"), 1L)
expect_equal(amatch(NA,"a", method="soundex"), NA_integer_)
expect_equal(amatch(NA,"a", method="soundex",nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="soundex"), 1L)
expect_equal(amatch(NA,NA, method="soundex",matchNA=FALSE), NA_integer_)
expect_equal(amatch(NA,NA, method="soundex",matchNA=FALSE,nomatch=0L), 0L)
expect_equal(amatch(NA,NA, method="soundex",matchNA=FALSE,nomatch=7L), 7L)
## amatch: useBytes
## bytewise matching differs from character wise matching
x <- paste0('Mot',intToUtf8(0x00F6),'rhead')
y <- c('bastard','Motorhead')
jwdist <- round(1-(1/3)*(8/9 + 8/10 + 1),3)
expect_equal(amatch(x, y, method='dl', maxDist=2, useBytes=TRUE), 2);
expect_equal(amatch(x, y, method='dl', maxDist=1, nomatch=0L, useBytes=TRUE), 0L);
expect_equal(amatch(x, x, method='hamming',maxDist=1L, useBytes=TRUE),1);
expect_equal(amatch(x, y, method='hamming',nomatch=0L,useBytes=TRUE), 0L);
expect_equal(amatch(x, y, method='jw', maxDist=1.0, useBytes=TRUE), 2);
expect_equal(amatch(x, y, method='jw', maxDist=jwdist-0.01, nomatch=0L, useBytes=TRUE), 0L);
expect_equal(amatch(x, y, method='lcs',maxDist=3, useBytes=TRUE),2L);
expect_equal(amatch(x, y, method='lcs',maxDist=2, useBytes=TRUE, nomatch=0L), 0L);
expect_equal(amatch(x, y, method='lv',maxDist=2, useBytes=TRUE),2L);
expect_equal(amatch(x, y, method='lv',maxDist=1, useBytes=TRUE, nomatch=0L), 0L);
expect_equal(amatch(x, y, method='osa',maxDist=2, useBytes=TRUE),2L);
expect_equal(amatch(x, y, method='osa',maxDist=1, useBytes=TRUE, nomatch=0L), 0L);
expect_equal(amatch(x, y, method='qgram',maxDist=7, q=3, useBytes=TRUE),2L);
expect_equal(amatch(x, y, method='qgram',maxDist=6, q=3, useBytes=TRUE, nomatch=0L), 0L);
## seq_amatch
## Input checks for seq_amatch
expect_equal(seq_amatch(list(1:10),list(1:10)),seq_amatch(1:10,1:10))
expect_equal(seq_amatch(list(1:10),list(1:10)),seq_amatch(as.numeric(1:10),as.numeric(1:10)))
## Some elementary tests for seq_amatch and seq_ain
x <- list(c(1L,3L,2L))
table <- list(
c(2L,3L,4L)
,c(1L,2L,3L)
)
expect_equal(seq_amatch(x,table,maxDist=3), 2)
expect_equal(seq_amatch(list(NA_integer_),table,maxDist=3),NA_integer_ )
expect_true(seq_ain(x,table,maxDist=3))
expect_false(seq_ain(x,table))
expect_error(seq_amatch(x,table,nthread=1:4))
expect_error(seq_amatch(x,table,nthread="foo"))
expect_error(seq_amatch(x,table,nthread=integer(0)))
expect_error(seq_amatch(x,table,nthread=NULL))
|
