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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/stats.R
\name{clonal.space.homeostasis}
\alias{clonal.space.homeostasis}
\title{Clonal space homeostasis.}
\usage{
clonal.space.homeostasis(
.data,
.clone.types = c(Rare = 1e-05, Small = 1e-04, Medium = 0.001, Large = 0.01,
Hyperexpanded = 1),
.prop.col = "Read.proportion"
)
}
\arguments{
\item{.data}{Cloneset data frame or list with such data frames.}
\item{.clone.types}{Named numeric vector.}
\item{.prop.col}{Which column to use for counting proportions.}
}
\description{
Compute clonal space homeostatsis - statistics of how many space occupied by clones
with specific proportions.
}
\examples{
\dontrun{
data(twb)
# Compute summary space of clones, that occupy
# [0, .05) and [.05, 1] proportion.
clonal.space.homeostasis(twb, c(Low = .05, High = 1)))
# Low (0 < X <= 0.05) High (0.05 < X <= 1)
# Subj.A 0.9421980 0.05780198
# Subj.B 0.9239454 0.07605463
# Subj.C 0.8279270 0.17207296
# Subj.D 1.0000000 0.00000000
# I.e., for Subj.D sum of all read proportions for clones
# which have read proportion between 0 and .05 is equal to 1.
}
}
\seealso{
\link{vis.clonal.space}
}
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