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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/kmers.R
\name{get.kmers}
\alias{get.kmers}
\title{Get kmers from sequences.}
\usage{
get.kmers(
.data,
.head = -1,
.k = 5,
.clean = T,
.meat = F,
.verbose = T,
.left.shift = 0,
.right.shift = 0
)
}
\arguments{
\item{.data}{Either character vector or a data.frame.}
\item{.head}{Parameter for head function applied to the given data before kmer generation.}
\item{.k}{Size of the kmer.}
\item{.clean}{if T then remove sequences which contain '~' or '*' symbols. Useful for deleting out-of-frame aminoacid sequnces.}
\item{.meat}{if TRUE than .data must be data.frame with columns CDR3.amino.acid.sequence and Read.count.}
\item{.verbose}{if T then print progress.}
\item{.left.shift}{Cut all \code{.left.shift} symbols from the left side for each sequence.}
\item{.right.shift}{Cut all \code{.right.shift} symbols from the right side for each sequence.}
}
\value{
Data.frame with 2 columns Kmers and Count / Rank / Proportion relatively to the .value param
or a list with such data.frames if .data is a list.
}
\description{
Get vector of kmers from the given character vector or data frame.
}
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