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\name{xtableList}
\alias{xtableList}
\alias{print.xtableList}
\title{
Create and Export Lists of Tables
}
\description{
\code{xtableList} creates an object from a list of tables, which can
be used by \code{print.xtableList} to produce a composite table
containing the information from the individual tables.
}
\usage{
xtableList(x, caption = NULL, label = NULL,
align = NULL, digits = NULL, display = NULL, ...)
\method{print}{xtableList}(x,
type = getOption("xtable.type", "latex"),
file = getOption("xtable.file", ""),
append = getOption("xtable.append", FALSE),
floating = getOption("xtable.floating", TRUE),
floating.environment = getOption("xtable.floating.environment", "table"),
table.placement = getOption("xtable.table.placement", "ht"),
caption.placement = getOption("xtable.caption.placement", "bottom"),
caption.width = getOption("xtable.caption.width", NULL),
latex.environments = getOption("xtable.latex.environments", c("center")),
tabular.environment = getOption("xtable.tabular.environment", "tabular"),
size = getOption("xtable.size", NULL),
hline.after = NULL,
NA.string = getOption("xtable.NA.string", ""),
include.rownames = getOption("xtable.include.rownames", TRUE),
colnames.format = "single",
only.contents = getOption("xtable.only.contents", FALSE),
add.to.row = NULL,
sanitize.text.function = getOption("xtable.sanitize.text.function", NULL),
sanitize.rownames.function = getOption("xtable.sanitize.rownames.function",
sanitize.text.function),
sanitize.colnames.function = getOption("xtable.sanitize.colnames.function",
sanitize.text.function),
sanitize.subheadings.function =
getOption("xtable.sanitize.subheadings.function",
sanitize.text.function),
sanitize.message.function =
getOption("xtable.sanitize.message.function",
sanitize.text.function),
math.style.negative = getOption("xtable.math.style.negative", FALSE),
math.style.exponents = getOption("xtable.math.style.exponents", FALSE),
html.table.attributes = getOption("xtable.html.table.attributes", "border=1"),
print.results = getOption("xtable.print.results", TRUE),
format.args = getOption("xtable.format.args", NULL),
rotate.rownames = getOption("xtable.rotate.rownames", FALSE),
rotate.colnames = getOption("xtable.rotate.colnames", FALSE),
booktabs = getOption("xtable.booktabs", FALSE),
scalebox = getOption("xtable.scalebox", NULL),
width = getOption("xtable.width", NULL),
comment = getOption("xtable.comment", TRUE),
timestamp = getOption("xtable.timestamp", date()),
...)
}
\arguments{
\item{x}{
For \code{xtableList}, a list of \R objects all of the same class,
being a class found among \code{methods(xtable)}. The list may also
have attributes \code{"subheadings"} and \code{"message"}. The
attribute \code{"subheadings"} should be a character vector of the
same length as the list \code{x}. The attribute \code{"message"}
should be a character vector of any length.
For \code{print.xtableList}, an object of class \code{xtableList}
produced by a call to \code{xtableList}.}
\item{caption}{Character vector of length 1 or 2 containing the
table's caption or title. If length is 2, the second item is the
"short caption" used when LaTeX generates a "List of Tables". Set to
\code{NULL} to suppress the caption. Default value is \code{NULL}. }
\item{label}{Character vector of length 1 containing the LaTeX label
or HTML anchor. Set to \code{NULL} to suppress the label. Default
value is \code{NULL}. }
\item{align}{Character vector of length equal to the number of columns
of the resulting table, indicating the alignment of the corresponding
columns. Also, \code{"|"} may be used to produce vertical lines
between columns in LaTeX tables, but these are effectively ignored
when considering the required length of the supplied vector. If a
character vector of length one is supplied, it is split as
\code{strsplit(align, "")[[1]]} before processing. Since the row
names are printed in the first column, the length of \code{align} is
one greater than \code{ncol(x)} if \code{x} is a
\code{data.frame}. Use \code{"l"}, \code{"r"}, and \code{"c"} to
denote left, right, and center alignment, respectively. Use
\code{"p{3cm}"} etc. for a LaTeX column of the specified width. For
HTML output the \code{"p"} alignment is interpreted as \code{"l"},
ignoring the width request. Default depends on the class of
\code{x}. }
\item{digits}{
Either \code{NULL}, or a vector of length one, or a vector of length
equal to the number of columns in the resulting table, indicating
the number of digits to display in the corresponding columns, or a
list if length equal to the number of R objects making up \code{x},
all members being vectors of the same length, either length one or
of length equal to the number of columns in the resulting table. See
details for further information.}
\item{display}{
Either \code{NULL}, or a vector of length one, or a vector of length
equal to the number of columns in the resulting table, indicating
the format of the corresponding columns, or a
list if length equal to the number of R objects making up \code{x},
all members being vectors of the same length, either length one or
of length equal to the number of columns in the resulting table. See
details for further information.}
\item{type}{Type of table to produce. Possible values for \code{type}
are \code{"latex"} or \code{"html"}.
Default value is \code{"latex"}.}
\item{file}{Name of file where the resulting code should be saved. If
\code{file=""}, output is displayed on screen. Note that the
function also (invisibly) returns a character vector of the results
(which can be helpful for post-processing).
Default value is \code{""}.}
\item{append}{If \code{TRUE} and \code{file!=""}, code will be
appended to \code{file} instead of overwriting \code{file}.
Default value is \code{FALSE}.}
\item{floating}{If \code{TRUE} and \code{type="latex"}, the resulting
table will be a floating table (using, for example,
\code{\\begin\{table\}} and \code{\\end\{table\}}). See
\code{floating.environment} below.
Default value is \code{TRUE}. }
\item{floating.environment}{If \code{floating=TRUE} and
\code{type="latex"}, the resulting table uses the specified floating
environment. Possible values include \code{"table"}, \code{"table*"},
and other floating environments defined in LaTeX packages.
Default value is \code{"table"}.}
\item{table.placement}{If \code{floating=TRUE} and
\code{type="latex"}, the floating table will have placement given by
\code{table.placement} where \code{table.placement} must be
\code{NULL} or contain only elements of
\{"h","t","b","p","!","H"\}.
Default value is \code{"ht"}.}
\item{caption.placement}{The caption will be placed at the bottom
of the table if \code{caption.placement} is \code{"bottom"} and at
the top of the table if it equals \code{"top"}.
Default value is \code{"bottom"}.}
\item{caption.width}{The caption will be placed in a \code{"parbox"}
of the specified width if \code{caption.width} is not \code{NULL} and
\code{type="latex"}. Default value is \code{NULL}.}
\item{latex.environments}{If \code{floating=TRUE} and
\code{type="latex"}, the specified LaTeX environments (provided as
a character vector) will enclose the tabular environment.
Default value is \code{"center"}. }
\item{tabular.environment}{When \code{type="latex"}, the tabular
environment that will be used.
When working with tables that extend more than one page, using
\code{tabular.environment="longtable"} with the corresponding
LaTeX package (see Fairbairns, 2005) allows one to typeset them
uniformly. Note that \code{floating} should be set to
\code{FALSE} when using the \code{longtable} environment.
Default value is \code{"tabular"}.}
\item{size}{A character vector that is inserted just before the
tabular environment starts. This can be used to set the font size
and a variety of other table settings. Initial backslashes are
automatically prefixed, if not supplied by user.
Default value is \code{NULL}. }
\item{hline.after}{When \code{type="latex"}, a vector of numbers
between -1 and the number of rows in the resulting table, inclusive,
indicating the rows after which a horizontal line should
appear. Determining row numbers is not straightforward since some
lines in the resulting table don't enter into the count. The
default depends on the value of \code{col.names.format}.}
\item{NA.string}{String to be used for missing values in table
entries.
Default value is \code{""}.}
\item{include.rownames}{If \code{TRUE} the rows names are
printed.
Default value is \code{TRUE}.}
\item{colnames.format}{Either \code{"single"} or \code{"multiple"}.
Default is \code{"single"}.}
\item{only.contents}{If \code{TRUE} only the rows of the
table are printed.
Default value is \code{FALSE}. }
\item{add.to.row}{A list of two components. The first component (which
should be called 'pos') is a list that contains the position of rows on
which extra commands should be added at the end. The second
component (which should be called 'command') is a character vector
of the same length as the first component, which contains the command
that should be added at the end of the specified rows.
Default value is \code{NULL}, i.e. do not add commands.}
\item{sanitize.text.function}{All non-numeric entries (except row and
column names) are sanitized in an attempt to remove characters which
have special meaning for the output format. If
\code{sanitize.text.function} is not \code{NULL}, it should
be a function taking a character vector and returning one, and will
be used for the sanitization instead of the default internal
function.
Default value is \code{NULL}.}
\item{sanitize.rownames.function}{Like the
\code{sanitize.text.function}, but applicable to row names.
The default uses the \code{sanitize.text.function}. }
\item{sanitize.colnames.function}{Like the
\code{sanitize.text.function}, but applicable to column names.
The default uses the \code{sanitize.text.function}. }
\item{sanitize.subheadings.function}{Like the
\code{sanitize.text.function}, but applicable to subheadings.
The default uses the \code{sanitize.text.function}. }
\item{sanitize.message.function}{Like the
\code{sanitize.text.function}, but applicable to the message.
The default uses the \code{sanitize.text.function}. }
\item{math.style.negative}{In a LaTeX table, if \code{TRUE}, then use
$-$ for the negative sign (as was the behavior prior to version 1.5-3).
Default value is \code{FALSE}.}
\item{math.style.exponents}{In a LaTeX table, if \code{TRUE} or
\code{"$$"}, then use \verb{$5 \times 10^{5}$} for 5e5. If
\code{"ensuremath"}, then use \verb{\\ensuremath{5 \times 10^{5}}}
for 5e5. If \code{"UTF-8"} or \code{"UTF-8"}, then use UTF-8 to
approximate the LaTeX typsetting for 5e5.
Default value is \code{FALSE}.}
\item{html.table.attributes}{In an HTML table, attributes associated
with the \code{<TABLE>} tag.
Default value is \code{"border=1"}.}
\item{print.results}{If \code{TRUE}, the generated table is printed to
standard output. Set this to \code{FALSE} if you will just be using
the character vector that is returned invisibly.
Default value is \code{TRUE}.}
\item{format.args}{List of arguments for the \code{formatC} function.
For example, standard German number separators can be specified as
\code{format.args=list(big.mark = "'", decimal.mark =
","))}. The arguments \code{digits} and \code{format} should not be
included in this list. See details.
Default value is \code{NULL}.}
\item{rotate.rownames}{If \code{TRUE}, the row names are displayed
vertically in LaTeX.
Default value is \code{FALSE}.}
\item{rotate.colnames}{If \code{TRUE}, the column names are displayed
vertically in LaTeX.
Default value is \code{FALSE}.}
\item{booktabs}{If \code{TRUE}, the \code{toprule}, \code{midrule} and
\code{bottomrule} commands from the LaTeX "booktabs" package are used
rather than \code{hline} for the horizontal line tags. }
\item{scalebox}{If not \code{NULL}, a \code{scalebox} clause will be
added around the tabular environment with the specified value used
as the scaling factor.
Default value is \code{NULL}.}
\item{width}{If not \code{NULL}, the specified value is included in
parentheses between the tabular environment \code{begin} tag and the
alignment specification. This allows specification of the table
width when using tabular environments such as \code{tabular*} and
\code{tabularx}. Note that table width specification is not
supported with the \code{tabular} or \code{longtable} environments.
Default value is \code{NULL}.}
\item{comment}{If \code{TRUE}, the version and timestamp comment is
included. Default value is \code{TRUE}. }
\item{timestamp}{Timestamp to include in LaTeX comment. Set this
to \code{NULL} to exclude the timestamp. Default value is
\code{date()}. }
\item{\dots}{Additional arguments. (Currently ignored.)}
}
\details{
\code{xtableList} produces an object suitable for printing using
\code{print.xtableList}.
The elements of the list \code{x} supplied to \code{xtableList} must
all have the same structure. When these list items are submitted to
\code{xtable} the resulting table must have the same number of columns
with the same column names and type of data.
The values supplied to arguments \code{digits} and \code{display},
must be composed of elements as specified in those same arguments for
the function \code{\link{xtable}}. See the help for
\code{\link{xtable}} for details.
\code{print.xtableList} produces tables in two different formats
depending on the value of \code{col.names.format}. If
\code{col.names.format = "single"}, the resulting table has only a
single heading row. If \code{col.names.format = "multiple"} there is a
heading row for each of the subtables making up the complete table.
By default if \code{col.names.format = "single"}, there are horizontal
lines above and below the heading row, and at the end of each
subtable. If \code{col.names.format = "multiple"}, there are
horizontal lines above and below each appearance of the heading row,
and at the end of each subtable.
If \code{"subheadings"} is not \code{NULL}, the individual elements of
this vector (which can include newlines \verb{\\n}) produce a heading
line or lines for the subtables. When \code{col.names.format =
"multiple"} these subheadings appear \emph{above} the heading rows.
If \code{"message"} is not \code{NULL} the vector produces a line or
lines at the end of the table.
Consult the vignette \sQuote{The \code{xtableList} Gallery} to see
the behaviour of these functions.
Note that at present there is no code for \code{type = "html"}.
}
\value{
\code{xtableList} produces an object of class
\code{"xtableList"}. An object of this class is a list of
\code{"xtable"} objects with some additional attributes. Each element
of the list can have a \code{"subheading"} attribute. The list can
also have a \code{"message"} attribute.
\code{print.xtableList} produces a character string containing LaTeX
markup which produces a composite table in a LaTeX document.
}
\author{
David Scott \email{d.scott@auckland.ac.nz}.
}
\seealso{
\code{\link{xtable}}, \code{\link{print.xtable}},
\code{\link{formatC}}
\code{\link{caption}}, \code{\link{label}}, \code{\link{align}},
\code{\link{digits}}, \code{\link{display}}
}
\examples{
data(mtcars)
mtcars <- mtcars[, 1:6]
mtcarsList <- split(mtcars, f = mtcars$cyl)
attr(mtcarsList, "subheadings") <- paste0("Number of cylinders = ",
names(mtcarsList))
attr(mtcarsList, "message") <- c("Line 1 of Message",
"Line 2 of Message")
xList <- xtableList(mtcarsList)
print.xtableList(xList)
print.xtableList(xList, colnames.format = "multiple")
}
\keyword{ print }
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