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#!/usr/bin/env perl
# Copyright © 2011, Battelle National Biodefense Institute (BNBI);
# all rights reserved. Authored by: Brian Ondov, Nicholas Bergman, and
# Adam Phillippy
#
# See the LICENSE.txt file included with this software for license information.
use strict;
BEGIN
{
use File::Basename;
use Cwd 'abs_path';
use lib dirname(abs_path($0)) . "/../lib";
use KronaTools;
}
setOption('out', 'xml.krona.html');
my @options =
qw(
out
url
);
getKronaOptions(@options);
if
(
@ARGV < 1
)
{
my $scriptName = getScriptName();
printHeader("KronaTools $KronaTools::version - $scriptName");
print
'Creates a Krona chart from xml data describing each node and how the chart
should look.
';
printHeader('Usage');
print
"$scriptName [options] <XML_file>
";
printColumns
(
' XML_file',
'A file containing XML tags that specify chart attributes and describe the node
hierarchy. An XML header is not necessary. For a complete description of XML
tags, see: https://sourceforge.net/p/krona/wiki/KronaTools/'
);
printOptions(@options);
exit;
}
my ($xmlFile) = @ARGV;
my $outFile = getOption('out');
print "Writing $outFile...\n";
open OUT, ">$outFile";
print OUT htmlHeader();
open IN, "<$xmlFile" or die $!;
while ( <IN> )
{
print OUT $_;
}
close IN;
print OUT htmlFooter();
close OUT;
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