1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
|
Source: ragout
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-python,
python3-dev,
python3-networkx,
python3-setuptools
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/ragout
Vcs-Git: https://salsa.debian.org/med-team/ragout.git
Homepage: https://github.com/fenderglass/Ragout/
Rules-Requires-Root: no
Package: ragout
Architecture: any
Depends: ${shlibs:Depends},
${python3:Depends},
${misc:Depends},
python3-networkx
Recommends: sibelia
Description: Reference-Assisted Genome Ordering UTility
Ragout (Reference-Assisted Genome Ordering UTility) is a tool for
chromosome-level scaffolding using multiple references. Given initial
assembly fragments (contigs/scaffolds) and one or multiple related
references (complete or draft), it produces a chromosome-scale assembly
(as a set of scaffolds).
.
The approach is based on the analysis of genome rearrangements (like
inversions or chromosomal translocations) between the input genomes and
reconstructing the most parsimonious structure of the target genome.
.
Ragout now supports both small and large genomes (of mammalian scale
and complexity). The assembly of highly polymorphic genomes is
currently limited.
Package: ragout-examples
Architecture: all
Depends: ${shlibs:Depends},
${python3:Depends},
${misc:Depends}
Multi-Arch: foreign
Description: Reference-Assisted Genome Ordering UTility (example data)
Ragout (Reference-Assisted Genome Ordering UTility) is a tool for
chromosome-level scaffolding using multiple references. Given initial
assembly fragments (contigs/scaffolds) and one or multiple related
references (complete or draft), it produces a chromosome-scale assembly
(as a set of scaffolds).
.
The approach is based on the analysis of genome rearrangements (like
inversions or chromosomal translocations) between the input genomes and
reconstructing the most parsimonious structure of the target genome.
.
Ragout now supports both small and large genomes (of mammalian scale
and complexity). The assembly of highly polymorphic genomes is
currently limited.
.
This package contains example data to test ragout.
|
