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OVLP_DIR := ragout/overlap/cpp_impl
M2S_DIR := ragout/maf2synteny/cpp_impl
BIN_DIR := $(shell pwd)/bin
#setting compiler (if not set)
ifeq (${CXX},)
IS_CLANG := $(shell which clang++ >/dev/null 2>&1; echo $$?)
IS_GCC := $(shell which g++ >/dev/null 2>&1; echo $$?)
ifeq (${IS_CLANG},0)
CXX := clang++
else ifeq (${IS_GCC},0)
CXX := g++
else
err:
$(error Neither gcc nor clang compilers were detected.)
endif
endif
#adding necessary flags
CXXFLAGS += -std=c++0x
UNAME := $(shell uname -s)
ifeq ($(UNAME),Darwin)
CXXFLAGS += -stdlib=libc++
LDFLAGS += -lc++
endif
export CXX
export CXXFLAGS
export LDFLAGS
export BIN_DIR
.PHONY: all overlap dependencies clean maf2synteny test
all: overlap maf2synteny
static: LDFLAGS += -static-libstdc++ -static-libgcc -static
static: all
overlap:
make -C ${OVLP_DIR} all
maf2synteny:
make -C ${M2S_DIR} all
dependencies:
scripts/install-sibelia.py
test:
scripts/run-tests.py
clean:
make -C ${OVLP_DIR} clean
make -C ${M2S_DIR} clean
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