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#!/bin/bash
set -e
pkg=ragout
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
gunzip -r *
set -x
ragout E.Coli/ecoli.rcp --outdir E.Coli/out/ --refine
ragout H.Pylori/helicobacter.rcp --outdir H.Pylori/out/ --refine
ragout S.Aureus/aureus.rcp --outdir S.Aureus/out/ --refine
ragout V.Cholerae/cholerae.rcp --outdir V.Cholerae/out/ --refine
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