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ragout 2.3-5
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 72,976 kB
  • sloc: python: 4,624; cpp: 2,314; makefile: 83; sh: 43
file content (37 lines) | stat: -rw-r--r-- 1,394 bytes parent folder | download | duplicates (3)
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Bug-Database: https://github.com/fenderglass/Ragout/issues
Bug-Submit: https://github.com/fenderglass/Ragout/issues/new
Reference:
 - Author: >
    Mikhail Kolmogorov and Joel Armstrong and Brian J. Raney and Ian Streeter
    and Matthew Dunn and Fengtang Yang and Duncan Odom and Paul Flicek and
    Thomas M. Keane and David Thybert and Benedict Paten and Son Pham
   Title: >
    Chromosome assembly of large and complex genomes using multiple references
   Journal: Genome Research
   Year: 2018
   Volume: 28
   Number: 11
   Pages: 1720-1732
   DOI: 10.1101/gr.236273.118
   PMID: 30341161
   URL: https://genome.cshlp.org/content/28/11/1720
   eprint: https://genome.cshlp.org/content/28/11/1720.full.pdf+html
 - Author: Mikhail Kolmogorov and Brian Raney and Benedict Paten and Son Pham
   Title: "Ragout -- a reference-assisted assembly tool for bacterial genomes"
   Journal: Bioinformatics
   Year: 2014
   Volume: 30
   Number: 12
   Pages: i302-9
   DOI: 10.1093/bioinformatics/btu280
   PMID: 24931998
   URL: https://academic.oup.com/bioinformatics/article/30/12/i302/388572
   eprint: "https://academic.oup.com/bioinformatics/article-pdf/\
    30/12/i302/1097844/btu280.pdf"
Registry:
 - Name: conda:bioconda
   Entry: ragout
 - Name: OMICtools
   Entry: OMICS_07883
Repository: https://github.com/fenderglass/Ragout.git
Repository-Browse: https://github.com/fenderglass/Ragout