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Source: rambo-k
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12),
javahelper,
default-jdk,
dh-python,
python3-all,
libcommons-cli-java,
liblog4j1.2-java
Standards-Version: 4.4.0
Vcs-Browser: https://salsa.debian.org/med-team/rambo-k
Vcs-Git: https://salsa.debian.org/med-team/rambo-k.git
Homepage: http://rambok.sourceforge.net/
Package: rambo-k
Architecture: all
Depends: ${java:Depends},
${python3:Depends},
${misc:Depends},
python3-sklearn
Description: Read Assignment Method Based On K-mers
RAMBO-K is a tool for rapid and sensitive removal of background sequences
from Next Generation Sequencing data.
.
RAMBO-K is a reference-based tool for rapid and sensitive extraction of
one organisms reads from a mixed dataset. It is based on a Markov chain
implementation, which uses genomic characteristics of each reference to
assign reads to the associated set.
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