File: rampler.1

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rampler 2.0.0-2
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.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
.TH RAMPLER "1" "June 2018" "rampler 1.1.0" "User Commands"
.SH NAME
rampler \- module for sampling genomic sequences
.SH DESCRIPTION
usage: rampler [options ...] <mode>
.SS <mode>
.SS subsample <sequences> <reference length> <coverage> [<coverage> ...]
.HP
<sequences>
.IP
input file in FASTA/FASTQ format (can be compressed with gzip)
containing sequences to be subsampled
.HP
<reference length>
.IP
integer denoting length of the reference genome (or
assembly) from which the sequences originate
.HP
<coverage>
.IP
integer denoting desired coverage of the subsampled
sequences
.SS split <sequences> <chunk size>
.HP
<sequences>
.IP
input file in FASTA/FASTQ format (can be compressed with gzip)
containing sequences which will be split into smaller chunks
.HP
<chunk size>
.IP
integer denoting the desired chunk size in bytes
.SH OPTIONS
.HP
\fB\-o\fR, \fB\-\-out\-directory\fR
.IP
default: current directory
path in which sampled files will be created
.HP
\fB\-\-version\fR
.IP
prints the version number
.HP
\fB\-h\fR, \fB\-\-help\fR
.IP
prints the usage
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.