File: run-unit-test

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rapmap 0.15.0%2Bdfsg-1
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#!/bin/bash
set -e

pkg="rapmap"

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP

cd $AUTOPKGTEST_TMP
gunzip -r *

rapmap quasiindex -t transcripts.fasta -i sample_quasi_index
rapmap quasiindex --perfectHash -t transcripts.fasta -i sample_quasi_index_ph