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<!doctype html public "-//IETF//DTD HTML 2.0//EN">
<HTML>
<HEAD>
<title>RasMol V2.7.5 Documentation</title>
</HEAD>
<BODY BACKGROUND="../html_graphics/rasmolwallpaper.jpg">
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<img alt="[IUCr Home Page]" src="../html_graphics/iucrhome.jpg"></a>
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| <a href="http://www.OpenrasMol.org">OpenRasMol</a> |
<A href="../README.html#Copying">Copying and Distribution</A> |
<A href="../README.html#Contents">Contents</A> |
<A href="../INSTALL.html">Installation Instructions</A> |<BR>
| <A href="../ChangeLog.html">Changes</A> |
<A href="../TODO.html">Things To Do</A> |
<A href="../README.html#Introduction">Introduction</A> |
<A href="../README.html#CodeAndBinaries">Source Code and Binaries</A> |<BR>
| <A href="rasmol.html">RasMol Manual</A> |
<a href="esrasmol27.html">Spanish Translation of RasMol Manual</a> |
<a href="itrasmol.hlp">Italian Translation of RasMol Help File</a> |<BR>
| <a href=http://www.rasmol.org/donate.shtml>Donate to Support RasMol</a> |
<a href="../README.html">Release README</A> |
<a href=http://www.rasmol.org/register.shtml>Register your RasMol</a> |
</CENTER>
<font color="#0808A0">
<H1 ALIGN=CENTER>Documentation<BR>
RasMol 2.7.5</H1>
<center>
<table celpadding=0>
<tr>
<td valign=top bgcolor="#A0FFFF"><font face="Helvetica,Arial,Times" size=2>
<ul>
<li><a href=http://www.rasmol.org/software/RasMol_Latest_Windows_Installer.exe>RasMol Latest Windows Installer</a> <br />
<br />
<li><a href=http://www.rasmol.org/software/RasMol_Latest.tar.gz>RasMol Latest Source Tarball </a><br />
<br />
<li><a href=http://www.rasmol.org/software/RasMol_Latest_Manual.html>RasMol Latest Manual </a><br />
<br />
<li><a href=http://www.rasmol.org/donate.shtml>Donate to Support RasMol </a><br />
<li><a href=http://www.rasmol.org/register.shtml>Register your RasMol</a><br />
</ul>
</font>
<td>
<td><IMG SRC="../html_graphics/rasmollogo.jpg" ALT="RasMol">
<td>
<td valign=top bgcolor="#FFFFA0"><font face="Helvetica,Arial,Times" size=2>
<ul>
<li><a href=http://www.rasmol.org/software/RasMol_2.7.5_Windows_Installer.exe>RasMol 2.7.5 Windows Installer</a> <br />
<br />
<li><a href=http://www.rasmol.org/software/RasMol_2.7.5.tar.gz>RasMol 2.7.5 Source Tarball</a><br />
<br />
<li><a href=http://www.rasmol.org/software/RasMol_2.7.5_Manual.html>RasMol 2.7.5 Manual</a><br />
<br />
<li><a href=http://www.rasmol.org/donate.shtml>Donate to Support RasMol </a><br />
<li><a href=http://www.rasmol.org/register.shtml>Register your RasMol</a><br />
</ul>
</font>
</table>
</center>
<H3 ALIGN=CENTER>
Molecular Graphics Visualisation Tool<BR>
26 January 2008<BR>
</H3>
</font><font color="#000000">
<CENTER>
Based on RasMol 2.6 by
Roger Sayle<BR>
Biomolecular Structures Group, Glaxo Wellcome Research & Development<BR>
Stevenage, Hertfordshire, UK<BR>
Version 2.6, August 1995, Version 2.6.4, December 1998<BR>
Copyright © Roger Sayle 1992-1999<BR>
</CENTER>
<P>
<CENTER>
and Based on Mods by
<table border=3>
<tr><th align="left">Author<th align="left">Version, Date<th align="left">Copyright
<tr><td>Arne Mueller<td>RasMol 2.6x1 May 1998<td>© Arne Mueller 1998
<tr><td valign="top">Gary Grossman and<br>Marco Molinaro<td>RasMol 2.5-ucb November 1995<br>RasMol 2.6-ucb November 1996
<td valign="top">© UC Regents/ModularCHEM<br>Consortium 1995, 1996
<tr><td>Philippe Valadon<td>RasTop 1.3 August 2000<td>© Philippe Valadon 2000
<tr><td valign="top">Herbert J. Bernstein<td>RasMol 2.7.0 March 1999<br>
RasMol 2.7.1 June 1999<br>RasMol 2.7.1.1 January 2001<BR>
RasMol 2.7.2 August 2000<br>RasMol 2.7.2.1 April 2001<br>RasMol 2.7.2.1.1 January 2004<br />
RasMol 2.7.3 February 2005<br />RasMol 2.7.3.1 Apr 06<br />RasMol 2.7.4 Nov 07<br />
RasMol 2.7.4.1 Jan 08<br />RasMol 2.7.4.2 Mar 08<br />RasMol 2.7.5 Jun 08<br />RasMol 2.7.5.1 Jul 08<br />
<td valign="top">© Herbert J. Bernstein 1998-2009
</table>
</CENTER>
<P>
RasMol 2.7.5 incorporates changes by T. Ikonen, G. McQuillan, N. Darakev and L. Andrews (via the neartree package).
Work on RasMol 2.7.5 supported in part by grant 1R15GM078077-01 from the National Institute of General Medical Sciences (NIGMS),
U.S. National Institutes of Health and by grant ER63601-1021466-0009501 from the Office of Biological & Environmental
Research (BER), Office of Science, U. S. Department of Energy. RasMol 2.7.4 incorporated changes by G. Todorov,
Nan Jia, N. Darakev, P. Kamburov, G. McQuillan, and J. Jemilawon. Work on RasMol 2.7.4 supported in part by
grant 1R15GM078077-01 from the NIGMS/NIH and grant ER63601-1021466-0009501 from BER/DOE. RasMol 2.7.3
incorporates changes by Clarice Chigbo, Ricky Chachra, and Mamoru Yamanishi. Work on RasMol 2.7.3
supported in part by grants DBI-0203064, DBI-0315281 and EF-0312612 from the U.S. National Science
Foundation and grant DE-FG02-03ER63601 from BER/DOE. The content is solely the responsibility of the
authors and does not necessarily represent the official views of the funding organizations.
<p>
The code for use of RasMol under GTK in RasMol 2.7.4.2 was written by Teemu Ikonen.
<P>
<CENTER>
and Incorporating Translations by
<table border=3>
<tr><th align="left">Author<th align="left">Item<th align="left">Language
<tr><td>Isabel Serván Martínez,<br>
José Miguel Fernández Fernández
<td valign="top">2.6 Manual<td valign="top">Spanish
<tr><td>José Miguel Fernández Fernández<td>2.7.1 Manual<td>Spanish
<tr><td>Fernando Gabriel Ranea<td>2.7.1 menus and messages<td>Spanish
<tr><td>Jean-Pierre Demailly<td>2.7.1 menus and messages<td>French
<tr><td>Giuseppe Martini, Giovanni Paolella,<br>A. Davassi, M. Masullo, C. Liotto
<td valign="top">2.7.1 menus and messages<br>
2.7.1 help file<td valign="top">Italian
<tr><td>G. Pozhvanov<td valign="top">2.7.3 menus and messages<td>Russian
<tr><td>G. Todorov<td valign="top">2.7.3 menus and messages<td>Bulgarian
<tr><td>Nan Jia, G. Todorov<td valign="top">2.7.3 menus and messages<td>Chinese
<tr><td>Mamoru Yamanishi, Katajima Hajime<td valign="top">2.7.3 menus and messages<td>Japanese
<tr>
<tr>
</table>
</CENTER>
<P>
<CENTER>
This Release by
<BR>Herbert J. Bernstein,
Bernstein + Sons, 5 Brewster Lane, Bellport, NY, USA<BR>
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Copyright © Herbert J. Bernstein 1998-2009<BR>
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<P>
The original RasMol manual was created by Roger Sayle. In July 1996,
Dr. Margaret Wong of the Chemistry Department, Swinburne University
of Technology, Australia, made extensive revisions to the RasMol 2.5
manual to accurately reflect the operation of RasMol 2.6. Eric Martz
of the University of Massachusetts made further revisions. In May
1997, William McClure of Carnegie Mellon University reorganized the
HTML version of the manual into multiple sections which could be
downloaded quickly and added use of frames. Portions of the 2.7.1
version of the RasMol manual were derived with permission from
William McClure's version using Roger Sayle's rasmol.doc for
version 2.6.4 as the primary source. Changes were made in
August 2000 for RasMol version 2.7.2, January 2001 for RasMol
version 2.7.1.1 and April 2001 for RasMol version 2.7.2.1 and
February 2005 for RasMol version 2.7.3.
<p>
<CENTER>Documentation Last Updated 19 July 2009<BR>
Edited by Herbert J. Bernstein and Frances C. Bernstein
</CENTER>
<p>
<H4 Align="CENTER">Translations</H4>
<P>Thanks to the efforts of José Miguel Fernández
Fernández (Departamento
de Bioquímica y Biología Molecular. Universidad de Granada.
España (<A HREF="mailto:jmfernan@ugr.es">jmfernan@ugr.es</A>)) a
<a href="esrasmol27.html">translation of the
Manual for Rasmol version 2.7.1 into Spanish</a> is now available.
La traducción española del manual de la
versión de la Dra. Wong revisada por Eric Martz fue realizada por
Isabel Serván Martínez y José Miguel Fernández
Fernández. La actual traducción del Manual de RasMol 2.7.1
ha sido realizada usando como base la anterior de RasMol 2.6 por
José Miguel Fernández Fernández.
<P>
Thanks to translations by Fernando Gabriel Ranea <davinci@dinamica.com.ar> in late 2000
and early 2001, RasMol is now
capable of rendering most menu items and messages in Spanish.
Jean-Pierre Demailly <Jean-Pierre.Demailly@ujf-grenoble.fr> provided French
translations of menus and messages in January 2001.
Giuseppe Martini <martini@iigb.na.cnr.it> and Giovanni Paolella <paolella@dbbm.unina.it>
with contributions by A. Davassi, M. Masullo and C. Liotto provided Italian
translation of menus and messages in March 2001.
</P>
<HR>
<H4 ALIGN=CENTER>
THIS IS A PRELIMINARY RELEASE INVOLVING EXTENSIVE MODIFICATIONS<BR>
***** USE WITH CAUTION ******<BR>
</H4>
<HR>
<H2 ALIGN=CENTER>IMPORTANT</H2>
<P>
This version is based directly
on RasMol version 2.7.4.2,
on RasMol version 2.7.4.1,
on RasMol version 2.7.4,
on RasMol version 2.7.3.1,
on RasMol vesion 2.7.3, on RasMol version 2.7.2.1.1,
on RasMol version 2.7.2, on RasMol version 2.7.1, on RasMol
version 2.6_CIF.2, on RasMol version 2.6x1, on RasMol version
2.6.4, and RasMol 2.5-ucb and 2.6-ucb.
<P>
Please read the file <A HREF = "NOTICE.html">NOTICE</A> for
important notices which apply to this package and for
license terms (<a href=../GPL>GPL</a> or <a href=../RASLIC>RASLIC</a>).
<HR>
<P>
This documentation directory contains the following "gzipped" files:
<P>
<CENTER>
<TABLE>
<TR><TD> <TD><A HREF="README.gz">README.gz</A><TD>Text version of this file<BR>
<TR><TD> <TD><A HREF="README.html.gz">README.html.gz<TD>HTML version of this file for WWW/HTTP<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="manualUS.rtf.gz">manualUS.rtf.gz</A><TD>8.5x11 RTF copy of User Manual<BR>
<TR><TD>(bin)<TD><A HREF="manualUS.ps.gz">manualUS.ps.gz</A><TD>8.5x11 PostScript version of the RasMol User Manual<BR>
<TR><TD>(bin)<TD><A HREF="manualUS.pdf.gz">manualUS.pdf.gz</A><TD>8.5x11 PDF version of the RasMol User Manual<BR>
<TR><TD> <TD><A HREF="manualA4.rtf.gz">manualA4.rtf.gz</A><TD>A4 RTF copy of User Manual<BR>
<TR><TD>(bin)<TD><A HREF="manualA4.ps.gz">manualA4.ps.gz</A><TD>A4 PostScript version of the RasMol User Manual<BR>
<TR><TD>(bin)<TD><A HREF="manualA4.pdf.gz">manualA4.pdf.gz </A><TD>A4 PDF version of the RasMol User Manual<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="refcardUS.rtf.gz">refcardUS.rtf.gz</A><TD>8.5x11 RTF copy of Ref. Card<BR>
<TR><TD>(bin)<TD><A HREF="refcardUS.ps.gz">refcardUS.ps.gz</A><TD>8.5x11 PostScript version of Quick Reference Card<BR>
<TR><TD>(bin)<TD><A HREF="refcardUS.pdf.gz">refcardUS.pdf.gz</A><TD>8.5x11 PDF version of Quick Reference Card<BR>
<TR><TD> <TD><A HREF="refcardA4.rtf.gz">refcardA4.rtf.gz</A><TD>A4 RTF copy of Ref. Card<BR>
<TR><TD>(bin)<TD><A HREF="refcardA4.ps.gz">refcardA4.ps.gz</A><TD>A4 PostScript version of Quick Reference Card<BR>
<TR><TD>(bin)<TD><A HREF="refcardA4.pdf.gz">refcardA4.pdf.gz</A><TD>A4 PDF version of Quick Reference Card<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="rasmol.0.gz">rasmol.0.gz</A><TD>ASCII text formatted version of UNIX 'man' page<BR>
<TR><TD> <TD><A HREF="rasmol.1.gz">rasmol.1.gz</A><TD>Nroff macro version of the UNIX `man' page<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD>(bin)<TD><A HREF="rasmol.hlp">rasmol.hlp</A><TD>RasMol help file (unix, mac, windows)<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="rasmol.vms.gz">rasmol.vms.gz</A><TD>RasMol help file (VMS librarian HELP text)<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="raswin.rtf.gz">raswin.rtf.gz</A><TD>RTF source of RasMol WinHelp document<BR>
<TR><TD>(bin)<TD><A HREF="raswin.hpj.gz">raswin.hpj.gz</A><TD>Parameter file for RasMol WinHelp document<BR>
<TR><TD>(bin)<TD><A HREF="raswin.hlp.gz">raswin.hlp.gz</A><TD>RasMol WinHelp file<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="rasmol.html.gz">rasmol.html.gz</A><TD>HTML version of User Manual for WWW/HTTP<BR>
</TABLE>
</CENTER>
<P>
Files marked "(bin)" should be transmitted in binary form.
<P>
In addition to the files listed above, there is a master rasmol document file,
<A href="rasmol.doc.gz">rasmol.doc.gz</A>, a <A href="Makefile">Makefile</A> and
a copy of Roger Sayle's document preparation program
<A href="prepdoc.c">prepdoc.c</A> which are used in creating new versions
of the documentation.
<P>
For those who need uncompressed versions and can accept the longer download
times, uncompressed versions are available:
<P>
<CENTER>
<TABLE>
<TR><TD> <TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/README">README</A><TD>Text version of this file<BR>
<TR><TD> <TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/README.html>README.html</A><TD>HTML version of this file for WWW/HTTP<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/manualUS.rtf">manualUS.rtf</A><TD>8.5x11 RTF copy of User Manual<BR>
<TR><TD>(bin)<TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/manualUS.ps">manualUS.ps</A><TD>8.5x11 PostScript version of the RasMol
User Manual<BR>
<TR><TD>(bin)<TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/manualUS.pdf">manualUS.pdf</A><TD>8.5x11 PDF version of the RasMol User
Manual<BR>
<TR><TD> <TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/manualA4.rtf">manualA4.rtf</A><TD>A4 RTF copy of User Manual<BR>
<TR><TD>(bin)<TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/manualA4.ps">manualA4.ps</A><TD>A4 PostScript version of the RasMol User
Manual<BR>
<TR><TD>(bin)<TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/manualA4.pdf">manualA4.pdf </A><TD>A4 PDF version of the RasMol User
Manual<BR> <TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/refcardUS.rtf">refcardUS.rtf</A><TD>8.5x11 RTF copy of Ref. Card<BR>
<TR><TD>(bin)<TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/refcardUS.ps">refcardUS.ps</A><TD>8.5x11 PostScript version of Quick
Reference Card<BR>
<TR><TD>(bin)<TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/refcardUS.pdf">refcardUS.pdf</A><TD>8.5x11 PDF version of Quick Reference
Card<BR> <TR><TD> <TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.2/doc/refcardA4.rtf">refcardA4.rtf</A><TD>A4 RTF copy of Ref. Card<BR>
<TR><TD>(bin)<TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/refcardA4.ps">refcardA4.ps</A><TD>A4 PostScript version of Quick
Reference Card<BR>
<TR><TD>(bin)<TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/refcardA4.pdf">refcardA4.pdf</A><TD>A4 PDF version of Quick Reference
Card<BR> <TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/rasmol.0">rasmol.0</A><TD>ASCII text formatted version of UNIX 'man'
page<BR>
<TR><TD> <TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/rasmol.1">rasmol.1</A><TD>Nroff macro version of the UNIX `man' page<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD>(bin)<TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/rasmol.hlp">rasmol.hlp</A><TD>RasMol help file (unix, mac, windows)<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/rasmol.vms">rasmol.vms</A><TD>RasMol help file (VMS librarian HELP text)<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/raswin.rtf">raswin.rtf</A><TD>RTF source of RasMol WinHelp document<BR>
<TR><TD>(bin)<TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/raswin.hpj">raswin.hpj</A><TD>Parameter file for RasMol WinHelp document<BR>
<TR><TD>(bin)<TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/raswin.hlp">raswin.hlp</A><TD>RasMol WinHelp file<BR>
<TR><TD> <TD> <TD> <BR>
<TR><TD> <TD><A HREF="/cgi-bin/yaya/decomp.cgi/software/RasMol_2.7.5/doc/rasmol.html">rasmol.html</A><TD>HTML version of User Manual for WWW/HTTP<BR>
</TABLE>
</CENTER>
<P>
<hr>
Updated 26 January 2008.<BR>
Herbert J. Bernstein<BR>
Bernstein + Sons, 5 Brewster Lane, Bellport, NY 11713-2803, USA<BR>
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