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/*
Ray
Copyright (C) 2012 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#ifndef _KeyEncoder
#define _KeyEncoder
#include "types.h"
#include <code/Searcher/VirtualKmerColor.h>
#include <map>
#include <stdint.h>
using namespace std;
class KeyEncoder{
map<char,int> m_mapping;
void populateMap();
PhysicalKmerColor encode_EMBL_CDS(const char*identifier);
public:
PhysicalKmerColor getEncoded_EMBL_CDS(const char*identifier);
GeneOntologyIdentifier /**/ encodeGeneOntologyHandle(const char*identifier);
};
#endif
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