1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
|
/*
Ray
Copyright (C) 2011, 2012 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#ifndef _Partitioner_H
#define _Partitioner_H
#include <code/Mock/Parameters.h>
#include <code/SequencesLoader/Loader.h>
#include <RayPlatform/structures/StaticVector.h>
#include <RayPlatform/memory/RingAllocator.h>
#include <RayPlatform/scheduling/SwitchMan.h>
#include <RayPlatform/handlers/SlaveModeHandler.h>
#include <RayPlatform/handlers/MasterModeHandler.h>
#include <RayPlatform/core/ComputeCore.h>
#include <map>
using namespace std;
__DeclarePlugin(Partitioner);
__DeclareMasterModeAdapter(Partitioner,RAY_MASTER_MODE_COUNT_FILE_ENTRIES);
__DeclareSlaveModeAdapter(Partitioner,RAY_SLAVE_MODE_COUNT_FILE_ENTRIES);
/**
* This class counts the number of entries in each input file in parallel
* \author Sébastien Boisvert
*/
class Partitioner : public CorePlugin{
__AddAdapter(Partitioner,RAY_MASTER_MODE_COUNT_FILE_ENTRIES);
__AddAdapter(Partitioner,RAY_SLAVE_MODE_COUNT_FILE_ENTRIES);
MessageTag RAY_MPI_TAG_COUNT_FILE_ENTRIES;
MessageTag RAY_MPI_TAG_COUNT_FILE_ENTRIES_REPLY;
MessageTag RAY_MPI_TAG_FILE_ENTRY_COUNT;
MessageTag RAY_MPI_TAG_FILE_ENTRY_COUNT_REPLY;
MessageTag RAY_MPI_TAG_REQUEST_FILE_ENTRY_COUNTS;
MessageTag RAY_MPI_TAG_REQUEST_FILE_ENTRY_COUNTS_REPLY;
MasterMode RAY_MASTER_MODE_COUNT_FILE_ENTRIES;
MasterMode RAY_MASTER_MODE_LOAD_SEQUENCES;
SlaveMode RAY_SLAVE_MODE_COUNT_FILE_ENTRIES;
SlaveMode RAY_SLAVE_MODE_DO_NOTHING;
MasterMode RAY_MASTER_MODE_KILL_ALL_MPI_RANKS;
SwitchMan*m_switchMan;
/** the loader */
Loader m_loader;
/** did we initialize the master peer */
bool m_initiatedMaster;
/** did we initialize the slave peer */
bool m_initiatedSlave;
/** the number of peers that have finished sending counts */
int m_ranksDoneSending;
/** the number of peers that have finished counting files */
int m_ranksDoneCounting;
/** did the count was sent ?*/
bool m_sentCount;
/** the current file to send */
int m_currentFileToSend;
/** the current file to count */
int m_currentFileToCount;
/** are we currently sending counts ?*/
bool m_currentlySendingCounts;
/** counts for a peer slave */
map<int,LargeCount> m_slaveCounts;
/** counts for the master node */
map<int,LargeCount> m_masterCounts;
/** --- Below are the only elements necessary to bind Partitioner to the Ray software stack */
/** allocator for outgoing messages */
RingAllocator*m_outboxAllocator;
/** message inbox */
StaticVector*m_inbox;
/** message outbox */
StaticVector*m_outbox;
/** parameters */
Parameters*m_parameters;
/** --- */
bool checkIfPairedFilesAreValid();
public:
void constructor(RingAllocator*outboxAllocator,StaticVector*inbox,StaticVector*outbox,Parameters*parameters,
SwitchMan*switchMan);
void call_RAY_MASTER_MODE_COUNT_FILE_ENTRIES();
void call_RAY_SLAVE_MODE_COUNT_FILE_ENTRIES();
void registerPlugin(ComputeCore*core);
void resolveSymbols(ComputeCore*core);
};
#endif
|
