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/*
Ray -- Parallel genome assemblies for parallel DNA sequencing
Copyright (C) 2013 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#ifndef _PathEvaluator_h
#define _PathEvaluator_h
#include <code/Mock/Parameters.h>
#include <RayPlatform/core/ComputeCore.h>
__DeclarePlugin(PathEvaluator);
__DeclareMasterModeAdapter(PathEvaluator,RAY_MASTER_MODE_EVALUATE_PATHS);
__DeclareSlaveModeAdapter(PathEvaluator,RAY_SLAVE_MODE_EVALUATE_PATHS);
/**
* Evaluate the quality of paths.
*
* \author Sébastien Boisvert
**/
class PathEvaluator : public CorePlugin {
bool m_masterModeStarted;
__AddAdapter(PathEvaluator,RAY_MASTER_MODE_EVALUATE_PATHS);
__AddAdapter(PathEvaluator,RAY_SLAVE_MODE_EVALUATE_PATHS);
MasterMode RAY_MASTER_MODE_EVALUATE_PATHS;
MasterMode RAY_MASTER_MODE_ASK_EXTENSIONS;
SlaveMode RAY_SLAVE_MODE_EVALUATE_PATHS;
MessageTag RAY_MPI_TAG_EVALUATE_PATHS;
void writeCheckpointForContigPaths();
Parameters*m_parameters;
/** contig paths */
vector<GraphPath>*m_contigs;
vector<PathHandle>*m_contigNames;
public:
void registerPlugin(ComputeCore*core);
void resolveSymbols(ComputeCore*core);
void call_RAY_MASTER_MODE_EVALUATE_PATHS();
void call_RAY_SLAVE_MODE_EVALUATE_PATHS();
};
#endif /* _PathEvaluator_h */
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