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/*
Ray
Copyright (C) 2011, 2012 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#include "SummarizedLink.h"
SummarizedLink::SummarizedLink(PathHandle leftContig,Strand leftStrand,PathHandle rightContig,
Strand rightStrand,int average,int count,
int standardDeviation){
m_standardDeviation=standardDeviation;
m_leftContig=leftContig;
m_leftStrand=leftStrand;
m_rightContig=rightContig;
m_rightStrand=rightStrand;
m_average=average;
m_count=count;
}
PathHandle SummarizedLink::getLeftContig(){
return m_leftContig;
}
Strand SummarizedLink::getLeftStrand(){
return m_leftStrand;
}
PathHandle SummarizedLink::getRightContig(){
return m_rightContig;
}
Strand SummarizedLink::getRightStrand(){
return m_rightStrand;
}
int SummarizedLink::getAverage(){
return m_average;
}
int SummarizedLink::getCount(){
return m_count;
}
void SummarizedLink::pack(MessageUnit*buffer,int*position){
buffer[(*position)++]=getLeftContig().getValue();
buffer[(*position)++]=getLeftStrand();
buffer[(*position)++]=getRightContig().getValue();
buffer[(*position)++]=getRightStrand();
buffer[(*position)++]=getCount();
buffer[(*position)++]=getAverage();
buffer[(*position)++]=getStandardDeviation();
}
void SummarizedLink::unpack(MessageUnit*buffer,int*position){
m_leftContig=buffer[(*position)++];
m_leftStrand=buffer[(*position)++];
m_rightContig=buffer[(*position)++];
m_rightStrand=buffer[(*position)++];
m_count=buffer[(*position)++];
m_average=buffer[(*position)++];
m_standardDeviation=buffer[(*position)++];
}
SummarizedLink::SummarizedLink(){
}
int SummarizedLink::getStandardDeviation(){
return m_standardDeviation;
}
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