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/*
Ray
Copyright (C) 2011, 2012 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#ifndef _SummarizedLink
#define _SummarizedLink
#include <code/Mock/constants.h>
#include <code/SeedingData/PathHandle.h>
#include <RayPlatform/core/types.h>
#include <stdint.h>
class SummarizedLink{
int m_count;
PathHandle m_leftContig;
PathHandle m_rightContig;
Strand m_leftStrand;
Strand m_rightStrand;
int m_average;
int m_standardDeviation;
public:
SummarizedLink(PathHandle leftContig,char leftStrand,PathHandle rightContig,Strand rightStrand,int average,int count,int standardDeviation);
SummarizedLink();
int getStandardDeviation();
PathHandle getLeftContig();
Strand getLeftStrand();
PathHandle getRightContig();
Strand getRightStrand();
int getAverage();
int getCount();
void pack(MessageUnit*a,int*b);
void unpack(MessageUnit*buffer,int*position);
};
#endif
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