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/*
Ray
Copyright (C) 2010, 2011, 2012 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#ifndef _ContigHit_h
#define _ContigHit_h
#include <code/Mock/constants.h>
#include <code/SeedingData/PathHandle.h>
#include <RayPlatform/core/types.h>
#include <stdint.h>
class ContigHit{
int m_sequenceId;
PathHandle m_contigId;
Strand m_contigStrand;
int m_matches;
public:
ContigHit(int sequence,PathHandle contig,Strand strand,int matches);
int getSequence();
PathHandle getContig();
Strand getStrand();
int getMatches();
};
#endif
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