1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
|
/*
Ray
Copyright (C) 2012 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#include <code/SeedingData/PathHandle.h>
#include <code/Mock/constants.h>
#include <RayPlatform/core/types.h>
#include <stdint.h> /* for uint64_t */
#include <fstream>
using namespace std;
#ifndef _ContigSearchEntry_h
#define _ContigSearchEntry_h
class ContigSearchEntry{
PathHandle m_name;
int m_length;
int m_modeCoverage;
double m_meanCoverage;
int m_coloredKmers;
public:
ContigSearchEntry(PathHandle name,int length,int mode,double mean,int coloredKmers);
PathHandle getName();
int getLength();
int getMode();
double getMean();
int getTotal();
void write(ofstream*f,LargeCount total,int kmerLength);
};
#endif
|
