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/*
Ray
Copyright (C) 2010, 2011, 2012 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#ifndef _DistributionWriter_h
#define _DistributionWriter_h
#include <code/Mock/constants.h>
#include <RayPlatform/core/types.h> /* for Rank */
#include <map>
#include <stdint.h>
#include <fstream>
#include <string>
#include <sstream>
using namespace std;
/**
*
* this class writes xml files for frequencies observed.
*/
class DistributionWriter{
bool m_gotFile;
string m_base;
Rank m_rank;
ofstream m_output;
ostringstream m_output_Buffer;
int m_operations;
void openFile();
public:
DistributionWriter();
void setBase(const char*base);
void setRank(Rank rank);
void write(int directory,int file,int sequence,
map<CoverageDepth,LargeCount>*all,map<CoverageDepth,LargeCount>*uniquelyColored,map<CoverageDepth,LargeCount>*uniquelyColoredAndAssembled,
const char*directoryName,const char*fileName);
void close();
};
#endif
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