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/*
Ray
Copyright (C) 2010, 2011, 2012 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#ifndef _Chooser
#define _Chooser
#include "ExtensionData.h"
#include <code/Mock/Parameters.h>
#define IMPOSSIBLE_CHOICE -1
/**
* paired-end OpenAssembler chooser class
* Given a seed, its last vertex can have children
* To choose the correct child, Chooser is utilised.
* \author Sébastien Boisvert
*/
class Chooser{
public:
void chooseWithPairedReads(ExtensionData*m_ed,double m,
vector<set<int> >*battleVictories,Parameters*parameters);
void clear(int*a,int b);
};
#endif
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