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/*
Ray
Copyright (C) 2011, 2012 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#ifndef _NovaEngine_H
#define _NovaEngine_H
#include "Chooser.h"
#include <vector>
#include <map>
#include <set>
using namespace std;
/** This the new Ray NovaEngine(*)
*NovaEngine decides where to go in the k-mer graph
* \author Sébastien Boisvert
*/
class NovaEngine{
public:
/** choose where to go */
int choose(vector<map<int,int> >*distances,set<int>*invalidChoices,bool show);
};
#endif
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