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/*
* Ray -- Parallel genome assemblies for parallel DNA sequencing
* Copyright (C) 2013 Sébastien Boisvert
*
* http://DeNovoAssembler.SourceForge.Net/
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, version 3 of the License.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You have received a copy of the GNU General Public License
* along with this program (gpl-3.0.txt).
* see <http://www.gnu.org/licenses/>
*/
#ifndef PathHandleHeader
#define PathHandleHeader
#include <RayPlatform/store/CarriageableItem.h>
#include <iostream>
using namespace std;
#include <stdint.h>
/**
* the identifier for a path in the de Bruijn graph
*/
class PathHandle : public CarriageableItem {
private:
uint64_t m_value;
public:
PathHandle(const uint64_t & value);
PathHandle();
void operator=(const PathHandle &b);
bool operator<(const PathHandle & b)const;
bool operator>(const PathHandle & b)const;
bool operator<=(const PathHandle & b)const;
bool operator>=(const PathHandle & b)const;
bool operator!=(const PathHandle & b)const;
bool operator==(const PathHandle & b)const;
void operator=(const uint64_t & value);
const uint64_t & operator () () const;
uint64_t & operator () ();
uint64_t operator / (uint64_t value);
uint64_t operator - (uint64_t value);
uint64_t operator * (uint64_t value);
uint64_t operator + (uint64_t value);
uint64_t operator % (uint64_t value);
void setValue(uint64_t value);
// add these 2 as friends.
/*
friend ostream & operator <<(ostream & stream, const PathHandle & handle);
friend ostream & operator >>(ostream & stream, const PathHandle & handle);
*/
const uint64_t & getValue() const;
uint64_t & getValue();
int load(const char * buffer);
int dump(char * buffer) const;
int getRequiredNumberOfBytes() const;
};
/**
* prototype for operators.
*/
ostream & operator <<(ostream & stream, const PathHandle & handle);
istream & operator >>(istream & stream, PathHandle & handle);
#endif
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