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/*
Ray
Copyright (C) 2010, 2011, 2012 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#include "PairedRead.h"
#include <code/Mock/common_functions.h>
#include <assert.h>
void PairedRead::constructor(int rank,int id,int library){
m_rank=rank;
m_readIndex=id;
m_library=library;
}
int PairedRead::getRank(){
return m_rank;
}
uint32_t PairedRead::getId(){
return m_readIndex;
}
/** any read has a unique distributed identifier */
ReadHandle PairedRead::getUniqueId(){
PathHandle handle = getPathUniqueId(m_rank,m_readIndex);
return handle.getValue();
}
int PairedRead::getLibrary(){
return m_library;
}
void PairedRead::write(ostream*f){
f->write((char*)&m_readIndex,sizeof(uint32_t));
f->write((char*)&m_rank,sizeof(uint16_t));
f->write((char*)&m_library,sizeof(uint16_t));
}
void PairedRead::read(istream*f){
f->read((char*)&m_readIndex,sizeof(uint32_t));
f->read((char*)&m_rank,sizeof(uint16_t));
f->read((char*)&m_library,sizeof(uint16_t));
}
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