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/*
* Ray -- Parallel genome assemblies for parallel DNA sequencing
Copyright (C) 2010, 2011, 2012, 2013 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#ifdef CONFIG_HAVE_LIBBZ2
#include "FastaBz2Loader.h"
#include <stdlib.h>
#include <fstream>
using namespace std;
FastaBz2Loader::FastaBz2Loader() {
addExtension(".fa.bz2");
addExtension(".fasta.bz2");
}
int FastaBz2Loader::getSize(){
return m_fastqBz2Loader.getSize();
}
int FastaBz2Loader::open(string file){
return m_fastqBz2Loader.openWithPeriod(file,2);
}
void FastaBz2Loader::load(int maxToLoad,ArrayOfReads*reads,MyAllocator*seqMyAllocator){
m_fastqBz2Loader.loadWithPeriod(maxToLoad,reads,seqMyAllocator,2);
}
void FastaBz2Loader::close(){
m_fastqBz2Loader.close();
}
#endif
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