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/*
* Ray -- Parallel genome assemblies for parallel DNA sequencing
Copyright (C) 2010, 2011, 2012, 2013 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#include "FastaLoaderForReads.h"
#include <code/Mock/constants.h>
#include <fstream>
#include <stdlib.h>
using namespace std;
FastaLoaderForReads::FastaLoaderForReads() {
addExtension(".fasta");
addExtension(".fa");
}
int FastaLoaderForReads::open(string file){
return m_fastqLoader.openWithPeriod(file,2);
}
void FastaLoaderForReads::load(int maxToLoad,ArrayOfReads*reads,MyAllocator*seqMyAllocator){
m_fastqLoader.loadWithPeriod(maxToLoad,reads,seqMyAllocator,2);
}
int FastaLoaderForReads::getSize(){
return m_fastqLoader.getSize();
}
void FastaLoaderForReads::close(){
m_fastqLoader.close();
}
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