1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
|
/*
* Ray -- Parallel genome assemblies for parallel DNA sequencing
Copyright (C) 2010, 2011, 2012, 2013 Sébastien Boisvert
http://DeNovoAssembler.SourceForge.Net/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You have received a copy of the GNU General Public License
along with this program (gpl-3.0.txt).
see <http://www.gnu.org/licenses/>
*/
#ifndef _LoaderInterface_h
#define _LoaderInterface_h
#include "Read.h"
#include "ArrayOfReads.h"
#include <string>
using namespace std;
/**
* This is a interface for implementing new file formats.
*
* \author Sébastien Boisvert
*/
class LoaderInterface {
private:
vector<string> m_extensions;
bool hasSuffix(const char* fileName,const char* suffix);
public:
virtual int open(string file) = 0;
virtual int getSize() = 0;
virtual void load(int maxToLoad,ArrayOfReads*reads,
MyAllocator*seqMyAllocator) = 0;
virtual void close() = 0;
bool checkFileType(const char* fileName);
void addExtension(const char* fileName);
};
#endif
|
