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/*
Copyright 2013 Sébastien Boisvert
Copyright 2013 Université Laval
Copyright 2013 Centre Hospitalier Universitaire de Québec
This file is part of Ray Surveyor.
Ray Surveyor is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.
Ray Surveyor is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with Ray Surveyor. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef ExperimentVertexHeader
#define ExperimentVertexHeader
#include <code/KmerAcademyBuilder/Kmer.h>
#include <code/Searcher/VirtualKmerColor.h>
#include <code/Searcher/ColorSet.h>
/**
* This class stores a vertex for the multi-sample
* analysis problem.
*
* \author Sébastien Boisvert
*/
class ExperimentVertex {
private:
VirtualKmerColorHandle m_color;
// TODO: don't store kmers here since it is the key elsewhere already !
// Otherwise, this consumes more memory and this is not good.
Kmer m_kmer;
public:
ExperimentVertex();
~ExperimentVertex();
Kmer getKey() const;
void setKey(Kmer & kmer);
void setVirtualColor(VirtualKmerColorHandle handle);
VirtualKmerColorHandle getVirtualColor() const;
};
#endif
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