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\documentclass[10pt]{article}
%\VignetteIndexEntry{Rcpp-extending}
%\VignetteEngine{highlight::highlight}
%\VignetteKeywords{Rcpp, package}
%\VignetteDepends{Rcpp}
\usepackage[USletter]{vmargin}
\setmargrb{0.75in}{0.75in}{0.75in}{0.75in}
\usepackage{color, alltt}
\usepackage[authoryear,round,longnamesfirst]{natbib}
\usepackage[colorlinks]{hyperref}
\definecolor{link}{rgb}{0,0,0.3} %% next few lines courtesy of RJournal.sty
\hypersetup{
colorlinks,%
citecolor=link,%
filecolor=link,%
linkcolor=link,%
urlcolor=link
}
\usepackage{microtype} %% cf http://www.khirevich.com/latex/microtype/
\usepackage[T1]{fontenc} %% cf http://www.khirevich.com/latex/font/
\usepackage[bitstream-charter]{mathdesign} %% cf http://www.khirevich.com/latex/font/
\newcommand{\proglang}[1]{\textsf{#1}}
\newcommand{\pkg}[1]{{\fontseries{b}\selectfont #1}}
%% defined as a stop-gap measure til interaction with highlight is sorted out
\newcommand{\hlboxlessthan}{ \hlnormalsizeboxlessthan}
\newcommand{\hlboxgreaterthan}{\hlnormalsizeboxgreaterthan}
\newcommand{\hlboxopenbrace}{ \hlnormalsizeboxopenbrace}
\newcommand{\hlboxclosebrace}{ \hlnormalsizeboxclosebrace}
\newcommand{\hlboxbacktick}{ \hlnormalsizeboxbacktick}
\newcommand{\hlboxunderscore}{ \hlnormalsizeboxunderscore}
%% This corresponds to setting boxes=TRUE for highlight
\newsavebox{\hlbox}
\definecolor{hlBg}{rgb}{0.949019607843137,0.949019607843137,0.949019607843137}
\definecolor{hlBd}{rgb}{0,0,0}
\renewenvironment{Hchunk}{\vspace{0.5em}\noindent\begin{lrbox}{\hlbox}\begin{minipage}[b]{.9\textwidth}}%
{\end{minipage}\end{lrbox}\fcolorbox{hlBd}{hlBg}{\usebox{\hlbox}}\vspace{0.5em}}
<<echo=FALSE,print=FALSE>>=
prettyVersion <- packageDescription("Rcpp")$Version
prettyDate <- format(Sys.Date(), "%B %e, %Y")
require(inline)
require(highlight)
require(Rcpp)
@
\author{Dirk Eddelbuettel \and Romain Fran\c{c}ois}
\title{Extending \pkg{Rcpp}}
\date{\pkg{Rcpp} version \Sexpr{prettyVersion} as of \Sexpr{prettyDate}}
\begin{document}
\maketitle
\abstract{
\noindent
This note provides an overview of the steps programmers should follow to
extend \pkg{Rcpp} \citep{CRAN:Rcpp,JSS:Rcpp} for use with their own classes. This document
is based on our experience in extending \pkg{Rcpp} to work with the
\pkg{Armadillo} \citep{Sanderson:2010:Armadillo} classes, available in the separate package
\pkg{RcppArmadillo} \citep{CRAN:RcppArmadillo}. This document assumes
knowledge of \pkg{Rcpp} as well as some knowledge of \proglang{C++}
templates \citep{Abrahams+Gurtovoy:2004:TemplateMetaprogramming}.
}
\section{Introduction}
\pkg{Rcpp} facilitates data interchange between \proglang{R} and
\proglang{C++} through the templated functions \texttt{Rcpp::as} (for
conversion of objects from \proglang{R} to \proglang{C++}) and
\texttt{Rcpp::wrap} (for conversion from \proglang{C++} to \proglang{R}). In
other words, we convert between the so-called \proglang{S}-expression
pointers (in type \texttt{SEXP}) to a templated \proglang{C++} type, and vice
versa. The corresponding function declarations are as follows:
<<lang=cpp>>=
// conversion from R to C++
template <typename T> T as( SEXP x) ;
// conversion from C++ to R
template <typename T> SEXP wrap(const T& object) ;
@
These converters are often used implicitly, as in the following code chunk:
<<echo=FALSE>>=
code <- '
// we get a list from R
List input(input_) ;
// pull std::vector<double> from R list
// this is achieved through an implicit call to Rcpp::as
std::vector<double> x = input["x"] ;
// return an R list
// this is achieved through implicit call to Rcpp::wrap
return List::create(
_["front"] = x.front(),
_["back"] = x.back()
) ;
'
writeLines( code, "code.cpp" )
@
<<echo=FALSE,results=tex>>=
external_highlight( "code.cpp", type = "LATEX", doc = FALSE )
@
<<>>=
fx <- cxxfunction( signature( input_ = "list"),
paste( readLines( "code.cpp" ), collapse = "\n" ),
plugin = "Rcpp"
)
input <- list( x = seq(1, 10, by = 0.5) )
fx( input )
@
The \pkg{Rcpp} converter function \texttt{Rcpp::as} and \texttt{Rcpp::wrap} have been
designed to be extensible to user-defined types and third-party types.
\section[Extending Rcpp::wrap]{Extending \texttt{Rcpp::wrap} }
The \pkg{Rcpp::wrap} converter is extensible in essentially two ways : intrusive
and non-intrusive.
\subsection{Intrusive extension}
When extending \pkg{Rcpp} with your own data type, the recommended way is to
implement a conversion to \texttt{SEXP}. This lets \texttt{Rcpp::wrap} know
about the new data type. The template meta programming (or TMP) dispatch is able to
recognize that a type is convertible to a \texttt{SEXP} and
\texttt{Rcpp::wrap} will use that conversion.
The caveat is that the type must be declared before the main header
file \texttt{Rcpp.h} is included.
<<lang=cpp>>=
#include <RcppCommon.h>
class Foo {
public:
Foo() ;
// this operator enables implicit Rcpp::wrap
operator SEXP() ;
}
#include <Rcpp.h>
@
This is called \emph{intrusive} because the conversion to \texttt{SEXP}
operator has to be declared within the class.
\subsection{Non-intrusive extension}
It is often desirable to offer automatic conversion to third-party types, over
which the developer has no control and can therefore not include a conversion
to \texttt{SEXP} operator in the class definition.
To provide automatic conversion from \proglang{C++} to \proglang{R}, one must
declare a specialization of the \texttt{Rcpp::wrap} template between the
includes of \texttt{RcppCommon.h} and \texttt{Rcpp.h}.
<<lang=cpp>>=
#include <RcppCommon.h>
// third party library that declares class Bar
#include <foobar.h>
// declaring the specialization
namespace Rcpp {
template <> SEXP wrap( const Bar& ) ;
}
// this must appear after the specialization,
// otherwise the specialization will not be seen by Rcpp types
#include <Rcpp.h>
@
It should be noted that only the declaration is required. The implementation
can appear after the \texttt{Rcpp.h} file is included, and therefore take
full advantage of the \pkg{Rcpp} type system.
\subsection{Templates and partial specialization}
It is perfectly valid to declare a partial specialization for the
\texttt{Rcpp::wrap} template. The compiler will identify the appropriate
overload:
<<lang=cpp>>=
#include <RcppCommon.h>
// third party library that declares template class Bling<T>
#include <foobar.h>
// declaring the partial specialization
namespace Rcpp {
namespace traits {
template <typename T> SEXP wrap( const Bling<T>& ) ;
}
}
// this must appear after the specialization,
// otherwise the specialization will not be seen by Rcpp types
#include <Rcpp.h>
@
\section[Extending Rcpp::as]{Extending \texttt{Rcpp::as}}
Conversion from \proglang{R} to \proglang{C++} is also possible
in both intrusive and non-intrusive ways.
\subsection{Intrusive extension}
As part of its template meta programming dispatch logic, \pkg{Rcpp::as}
will attempt to use the constructor of the target class taking a \texttt{SEXP}.
<<lang=cpp>>=
#include <RcppCommon.h>
#include <RcppCommon.h>
class Foo{
public:
Foo() ;
// this constructor enables implicit Rcpp::as
Foo(SEXP) ;
}
#include <Rcpp.h>
// this must appear after the specialization,
// otherwise the specialization will not be seen by Rcpp types
#include <Rcpp.h>
@
\subsection{Non intrusive extension}
It is also possible to fully specialize \texttt{Rcpp::as} to enable
non intrusive implicit conversion capabilities.
<<lang=cpp>>=
#include <RcppCommon.h>
// third party library that declares class Bar
#include <foobar.h>
// declaring the specialization
namespace Rcpp {
template <> Bar as( SEXP ) ;
}
// this must appear after the specialization,
// otherwise the specialization will not be seen by Rcpp types
#include <Rcpp.h>
@
\subsection{Templates and partial specialization}
The signature of \texttt{Rcpp::as} does not allow partial specialization.
When exposing a templated class to \texttt{Rcpp::as}, the programmer must
specialize the \pkg{Rcpp::traits::Exporter} template class. The TMP dispatch
will recognize that a specialization of \texttt{Exporter} is available
and delegate the conversion to this class. \pkg{Rcpp} defines
the \texttt{Rcpp::traits::Exporter} template class as follows :
<<lang=cpp>>=
namespace Rcpp {
namespace traits {
template <typename T> class Exporter{
public:
Exporter( SEXP x ) : t(x){}
inline T get(){ return t ; }
private:
T t ;
} ;
}
}
@
This is the reason why the default behavior of \texttt{Rcpp::as} is to
invoke the constructor of the type \texttt{T} taking a \texttt{SEXP}.
Since partial specialization of class templates is allowed, we can expose
a set of classes as follows:
<<lang=cpp>>=
#include <RcppCommon.h>
// third party library that declares template class Bling<T>
#include <foobar.h>
// declaring the partial specialization
namespace Rcpp {
namespace traits {
template <typename T> class Exporter< Bling<T> >;
}
}
// this must appear after the specialization,
// otherwise the specialization will not be seen by Rcpp types
#include <Rcpp.h>
@
Using this approach, the requirements for the \texttt{Exporter< Bling<T> >}
class are:
\begin{itemize}
\item it should have a constructor taking a \texttt{SEXP}
\item it should have a methods called \texttt{get} that returns an instance
of the \texttt{Bling<T>} type.
\end{itemize}
<<echo=FALSE>>=
unlink( "code.cpp" )
@
\section{Summary}
The \pkg{Rcpp} package greatly facilitates the transfer of objects between
\proglang{R} and \proglang{C++}. This note has shown how to extend \pkg{Rcpp}
to either user-defined or third-party classes via the \texttt{Rcpp::as} and
\texttt{Rcpp::wrap} template functions. Both intrusive and non-intrusive
approaches were discussed.
\bibliographystyle{plainnat}
\bibliography{Rcpp}
\end{document}
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