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|
@String{CRAN = "http://CRAN.R-Project.org/" }
@String{manuals = CRAN # "doc/manuals/" }
@String{RCoreTeam = "{R Core Team}" }
@String{RFoundation = "R Foundation for Statistical Computing" }
@String{R-Forge = "http://R-Forge.R-Project.org/" }
@manual{Abrahams+Grosse-Kunstleve:2003:Boost.Python,
author = { David Abrahams and Ralf W. Grosse-Kunstleve },
organization = "Boost Consulting",
title = "Building Hybrid Systems with Boost.Python",
year = 2003,
url = "http://www.boostpro.com/writing/bpl.pdf"
}
@Book{Abrahams+Gurtovoy:2004:TemplateMetaprogramming,
author = {David Abrahams and Aleksey Gurtovoy},
title = {{C++} {T}emplate {M}etaprogramming: Concepts, Tools
and Techniques from {B}oost and Beyond},
publisher = {Addison-Wesley},
year = 2004,
address = {Boston}
}
@book{Anderson:1990:UGLAPACK,
author = {Anderson, E. and Bai, Z. and Bischof, C. and
Blackford, S. and Demmel, J. and Dongarra, J. and Du
Croz, J. and Greenbaum, A. and Hammarling, S. and
McKenney, A. and Sorensen, D.},
title = {{LAPACK} Users' Guide},
edition = {Third},
publisher = {Society for Industrial and Applied Mathematics},
year = 1999,
address = {Philadelphia, PA},
isbn = {0-89871-447-8 (paperback)}
}
@Manual{Armstrong:2009:RAbstraction,
title = {{RAbstraction}: {C++} abstraction for {R} objects},
author = {Whit Armstrong},
year = 2009,
note = {Code repository last updated 2009-07-22.},
url = {http://github.com/armstrtw/rabstraction}
}
@Manual{Armstrong:2009:RObjects,
title = {{RObjects}: {C++} wrapper for R objects (a better
implementation of {RAbstraction}},
author = {Whit Armstrong},
year = 2009,
note = {Code repository last updated 2009-11-28.},
url = {http://github.com/armstrtw/RObjects}
}
@InProceedings{Bates+DebRoy:2001:C++Classes,
author = {Douglas M. Bates and Saikat DebRoy},
title = {{C++} Classes for {R} Objects},
booktitle = {Proceedings of the 2nd International Workshop on Distributed
Statistical Computing, March 15--17, 2001, Technische
Universit\"at Wien, Vienna, Austria},
editor = {Kurt Hornik and Friedrich Leisch},
year = {2001},
url = {http://www.ci.tuwien.ac.at/Conferences/DSC-2001/Proceedings/},
note = {ISSN 1609-395X}
}
@Misc{Brokken:2011:Cpp,
author = {Frank B. Brokken},
title = {C++ Annotations},
howpublished = {Electronic book, University of Groningen},
year = 2011,
url = {http://www.icce.rug.nl/documents/cplusplus/}
}
@Manual{CRAN:Matrix,
title = {\pkg{Matrix}: Sparse and Dense Matrix Classes and Methods},
author = {Douglas Bates and Martin Maechler},
year = 2018,
note = {R package version 1.2-14},
url = CRAN # "package=Matrix"
}
@Manual{CRAN:RInside,
title = {RInside: C++ classes to embed R in C++ applications},
author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
year = 2017,
note = {R package version 0.2.14},
url = CRAN # "package=RInside"
}
@Manual{CRAN:RProtoBuf,
title = {RProtoBuf: R Interface to the Protocol Buffers API},
author = {Romain Fran\c{c}ois and Dirk Eddelbuettel and Murray Stokely and Jeroen Ooms},
year = 2018,
note = {R package version 0.4.12},
url = CRAN # "package=RProtoBuf"
}
@Manual{CRAN:RQuantLib,
title = {RQuantLib: {R} interface to the {QuantLib} library},
author = {Dirk Eddelbuettel and Khanh Nguyen},
year = 2017,
note = {R package version 0.4.4},
url = CRAN # "package=RQuantLib"
}
@Manual{CRAN:RUnit,
title = {RUnit: R Unit Test Framework},
author = {Matthias Burger and Klaus Juenemann and Thomas
Koenig},
year = 2015,
note = {R package version 0.4.31},
url = {https://CRAN.R-project.org/package=RUnit},
}
@Manual{CRAN:Rcpp,
title = {{Rcpp}: Seamless {R} and {C++} Integration},
author = {Dirk Eddelbuettel and Romain Fran\c{c}ois and JJ
Allaire and Kevin Ushey and Qiang Kou and
Nathan Russel and John Chambers and Douglas Bates},
year = 2018,
note = {R package version 1.0.0},
url = CRAN # "package=Rcpp"
}
@Manual{CRAN:Rcpp:Attributes,
crossref = {CRAN:Rcpp},
author = {J. J. Allaire and Dirk Eddelbuettel and Romain
Fran\c{c}ois},
title = {{Rcpp} Attributes},
year = 2018,
note = {Vignette included in R package Rcpp},
url = CRAN # "package=Rcpp"
}
@Manual{CRAN:Rcpp:FAQ,
crossref = {CRAN:Rcpp},
author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
title = {Frequently Asked Questions About {Rcpp}},
year = 2018,
note = {Vignette included in R package {Rcpp}},
url = CRAN # "package=Rcpp"
}
@Manual{CRAN:Rcpp:Modules,
crossref = {CRAN:Rcpp},
author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
title = {Exposing {C++} functions and classes with {Rcpp} modules},
year = 2018,
note = {Vignette included in R package Rcpp},
url = CRAN # "package=Rcpp"
}
@Manual{CRAN:Rcpp:Package,
crossref = {CRAN:Rcpp},
author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
title = {Writing a package that uses {Rcpp}},
year = 2018,
note = {Vignette included in R package {Rcpp}},
url = CRAN # "package=Rcpp"
}
@Manual{CRAN:Rcpp:Sugar,
crossref = {CRAN:Rcpp},
author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
title = {Rcpp syntactic sugar},
year = 2018,
note = {Vignette included in R package {Rcpp}},
url = CRAN # "package=Rcpp"
}
@Manual{CRAN:RcppArmadillo,
title = {RcppArmadillo: Rcpp integration for Armadillo
templated linear algebra library},
author = {Dirk Eddelbuettel and Romain Fran\c{c}ois and
Douglas Bates and Binxiang Ni},
year = 2018,
note = {R package version 0.9.100.4.0},
url = CRAN # "package=RcppArmadillo"
}
@Manual{CRAN:RcppClassic,
title = {RcppClassic: Deprecated 'classic' Rcpp API},
author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
year = 2018,
note = {R package version 0.9.11},
url = CRAN # "package=RcppClassic"
}
@Manual{CRAN:RcppDE,
title = {RcppDE: Global optimization by differential evolution in C++},
author = {Dirk Eddelbuettel},
year = 2018,
note = {R package version 0.1.6},
url = CRAN # "package=RcppDE"
}
@Manual{CRAN:RcppEigen,
title = {RcppEigen: Rcpp integration for the Eigen templated linear
algebra library},
author = {Douglas Bates and Dirk Eddelbuettel and Romain Fran\c{c}ois and Yixuan Qiu},
year = 2018,
note = {{R} package version 0.3.3.4.0},
url = CRAN # "package=RcppEigen"
}
@Manual{CRAN:RcppExamples,
title = {RcppExamples: Examples using {Rcpp} to interface {R}
and {C++}},
author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
year = 2016,
note = {R package version 0.1.8},
url = CRAN # "package=RcppExamples"
}
@Manual{CRAN:RcppGSL,
title = {RcppGSL: Rcpp integration for GNU GSL vectors and matrices},
author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
year = 2018,
note = {R package version 0.3.6},
url = CRAN # "package=RcppGSL"
}
@Manual{CRAN:RcppZiggurat,
title = {RcppZiggurat: Rcpp Integration of Different Ziggurat Normal RNG Implementations},
author = {Dirk Eddelbuettel},
year = 2018,
note = {R package version 0.1.5},
url = CRAN # "package=RcppZiggurat"
}
@Manual{CRAN:Rserve,
title = {Rserve: Binary R server},
author = {Simon Urbanek},
year = 2013,
note = {R package version 1.7-3},
url = CRAN # "package=Rserve"
}
@Manual{CRAN:cxxPack,
title = {cxxpack: {R/C++} Tools for Literate Statistical
Practice},
author = {Dominick Samperi},
year = 2010,
note = {R package version 7.0.6},
url = CRAN # "package=cxxPack"
}
@Manual{CRAN:devtools,
title = {devtools: Tools to Make Developing R Packages
Easier},
author = {Hadley Wickham and Winston Chang},
year = 2016,
note = {R package version 1.12.0},
url = {https://CRAN.R-project.org/package=devtools},
}
@Manual{CRAN:highlight,
title = {highlight: Syntax highlighter},
author = {Romain Fran\c{c}ois},
year = 2017,
note = {R package with version 0.4.7.2},
url = CRAN # "package=highlight"
}
@Manual{CRAN:inline,
title = {inline: Inline C, C++, Fortran function calls from
R},
author = {Oleg Sklyar and Duncan Murdoch and Mike Smith and
Dirk Eddelbuettel and Romain Fran\c{c}ois},
year = 2015,
note = {R package version 0.3.14},
url = CRAN # "package=inline"
}
@Manual{CRAN:littler,
title = {littler: {R} at the {Command-Line} via r},
author = {Dirk Eddelbuettel and Jeffrey Horner},
year = 2017,
note = {R package version 0.3.2},
url = CRAN # "package=littler"
}
@Manual{CRAN:microbenchmark,
title = {microbenchmark: Accurate Timing Functions},
author = {Olaf Mersmann},
year = 2015,
note = {R package version 1.4-2.1},
url = {https://CRAN.R-project.org/package=microbenchmark}
}
@Manual{CRAN:minqa,
title = {minqa: Derivative-free optimization algorithms by
quadratic approximation},
author = {Douglas Bates and Katharine M. Mullen and John
C. Nash and Ravi Varadhan},
year = 2014,
note = {R package version 1.2.4},
url = CRAN # "package=minqa"
}
@Manual{CRAN:profvis,
title = {profvis: Interactive Visualizations for Profiling R Code},
author = {Winston Chang and Javier Luraschi},
year = 2017,
note = {R package version 0.3.3},
url = {https://CRAN.R-project.org/package=profvis},
}
@Manual{CRAN:rbenchmark,
title = {\pkg{rbenchmark}: Benchmarking routine for R},
author = {Wacek Kusnierczyk},
year = 2012,
note = {R package version 1.0.0},
url = CRAN # "package=rbenchmark"
}
@Manual{CRAN:roxygen2,
title = {roxygen2: In-source documentation for R},
author = {Hadley Wickham and Peter Danenberg and Manuel Eugster},
year = 2017,
note = {R package version 6.0.1},
url = CRAN # "package=roxygen2"
}
@Article{CRAN:testthat,
author = {Hadley Wickham},
title = {testthat: Get Started with Testing},
journal = {The R Journal},
year = 2011,
volume = 3,
pages = {5--10},
}
@Book{Chambers:1998:PwD,
author = {John M. Chambers},
title = {Programming with Data: {A} Guide to the {S} Language},
publisher = {Springer-Verlag},
year = 1998,
address = {Heidelberg},
note = {{ISBN} 978-0387985039}
}
@Book{Chambers:2008:SoDA,
author = {John M. Chambers},
title = {Software for Data Analysis: Programming with {R}},
publisher = {Springer-Verlag},
year = 2008,
series = {Statistics and Computing},
address = {Heidelberg},
note = {{ISBN} 978-0-387-75935-7}
}
@Book{Chambers:2016:ExtR,
author = {John M. Chambers},
title = {Extending R},
publisher = {Chapman and Hall/CRC},
year = 2016,
series = {{The R Series}},
address = {London},
note = {{ISBN} 9781498775717}
}
@Misc{Cpp11,
author = "ISO/IEC",
organization = "{International Organization for Standardization}",
title = "\proglang{C++} 2011 Standard Document 14882:2011",
howpublished = {ISO/IEC Standard Group for Information Technology / Programming Languages / C++},
year = 2011,
url = "http://www.iso.org/iso/iso_catalogue/catalogue_tc/catalogue_detail.htm?csnumber=50372",
urlansi = "http://webstore.ansi.org/RecordDetail.aspx?sku=ISO/IEC%2014882:2011"
}
@book{Dongarra:1979:UGLINPACK,
title = {LINPACK users' guide},
author = {Dongarra, Jack J and Moler, Cleve B and Bunch, James
R and Stewart, Gilbert W},
year = 1979,
publisher = {SIAM}
}
@Article{Eddelbuettel+Sanderson:2013:RcppArmadillo,
title = {{RcppArmadillo}: Accelerating {R} with High-Performance {C++} Linear Algebra},
author = {Dirk Eddelbuettel and Conrad Sanderson},
journal = {Computational Statistics and Data Analysis},
year = 2014,
volume = 71,
month = {March},
pages = {1054--1063},
doi = {10.1016/j.csda.2013.02.005},
url = {http://dx.doi.org/10.1016/j.csda.2013.02.005}
}
@Article{Eddelbuettel+Sanderson:2014:RcppArmadillo,
title = {{RcppArmadillo}: Accelerating {R} with High-Performance {C++} Linear Algebra},
author = {Dirk Eddelbuettel and Conrad Sanderson},
journal = {Computational Statistics and Data Analysis},
year = 2014,
volume = 71,
month = {March},
pages = {1054--1063},
doi = {10.1016/j.csda.2013.02.005},
url = {http://dx.doi.org/10.1016/j.csda.2013.02.005}
}
@Book{Eddelbuettel:2013:Rcpp,
author = {Dirk Eddelbuettel},
title = {Seamless R and C++ Integration with Rcpp},
publisher = {Springer},
series = {Use R!},
year = 2013,
address = {New York},
isbn = {978-1-4614-6867-7}
}
@article{Efron:1979:Bootstrap,
URL = {http://www.jstor.org/stable/2958830},
author = {Efron, B.},
journal = {The Annals of Statistics},
number = {1},
pages = {1-26},
publisher = {Institute of Mathematical Statistics},
title = {Bootstrap Methods: Another Look at the Jackknife},
volume = {7},
year = {1979}
}
@MISC{Eigen:Web,
author = {Ga\"{e}l Guennebaud and Beno\^{i}t Jacob and others},
title = {Eigen v3},
year = 2012,
url = {http://eigen.tuxfamily.org},
}
; see http://eigen.tuxfamily.org/index.php?title=BibTeX
; replaced 'howpublished' with 'url' and updated year to 2011, and again to 2012
@Manual{GSL,
title = {{GNU} {S}cientific {L}ibrary {R}eference {M}anual},
author = {Mark Galassi and Jim Davies and James Theiler and Brian Gough and Gerard Jungman and Patrick Alken and Michael Booth and Fabrice Rossi},
year = {2010},
edition = {3rd},
note = {Version 1.14. {ISBN} 0954612078},
url = {http://www.gnu.org/software/gsl}
}
@Book{Gentleman:2009:RProgramming,
author = {Robert Gentleman},
title = {R Programming for Bioinformatics},
publisher = {Chapman \& Hall/CRC},
year = 2009,
series = {Computer Science and Data Analysis},
address = {Boca Raton, FL}
}
@Manual{GitHub:Rperform,
title = {Rperform: Rperform - Performance testing for R packages},
author = {Akash Tandon and Toby Dylan Hocking},
year = {2015},
note = {R package version 0.0.0.9000},
}
@Article{Gropp+Lusk+Doss+Skjellum:1996:MPI,
author = {William Gropp and Ewing Lusk and Nathan Doss and Anthony Skjellum},
title = {A high-performance, portable implementation of the {MPI} message passing interface standard},
journal = {Parallel Computing},
year = 1996,
url = {http://dx.doi.org/10.1016/0167-8191(96)00024-5},
volume = 22,
number = 6,
pages = {789--828}
}
@Book{Gropp+Lusk+Skjellum:1999:MPI,
author = {William Gropp and Ewing Lusk and Anthony Skjellum},
title = {Using {MPI}: Portable Parallel Programming with the Message Passing Interface},
publisher = {MIT Press},
year = 1999,
series = {Scientific and Engineering Computation Series},
edition = {2nd},
month = {November},
note = {{ISBN} 978-0-262-57132-6}
}
@article{Ihaka:1996,
Author = {Ihaka, Ross and Gentleman, Robert},
Journal = {Journal of Computational and Graphical Statistics},
Number = 3,
Pages = {299--314},
Title = {R: A Language for Data Analysis and Graphics},
Volume = 5,
Year = 1996
}
@article{JOSS:RcppCNPy,
doi = {10.21105/joss.00055},
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