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from collections import Counter
from typing import Set, Tuple
from unittest.case import expectedFailure
import pytest
from rdflib.term import Node
from rdflib import Graph, RDF, BNode, URIRef, Namespace, ConjunctiveGraph, Literal
from rdflib.namespace import FOAF
from rdflib.compare import to_isomorphic, to_canonical_graph
import rdflib
from rdflib.plugins.stores.memory import Memory
from io import StringIO
import unittest
from .testutils import GraphHelper
def get_digest_value(rdf, mimetype):
graph = Graph()
graph.load(StringIO(rdf), format=mimetype)
stats = {}
ig = to_isomorphic(graph)
result = ig.graph_digest(stats)
print(stats)
return result
def negative_graph_match_test():
"""Test of FRIR identifiers against tricky RDF graphs with blank nodes."""
testInputs = [
[
str(
"""@prefix : <http://example.org/ns#> .
<http://example.org> :rel
[ :label "Same" ].
"""
),
str(
"""@prefix : <http://example.org/ns#> .
<http://example.org> :rel
[ :label "Same" ],
[ :label "Same" ].
"""
),
False,
],
[
str(
"""@prefix : <http://example.org/ns#> .
<http://example.org> :rel
<http://example.org/a>.
"""
),
str(
"""@prefix : <http://example.org/ns#> .
<http://example.org> :rel
<http://example.org/a>,
<http://example.org/a>.
"""
),
True,
],
[
str(
"""@prefix : <http://example.org/ns#> .
:linear_two_step_symmetry_start :related [ :related [ :related :linear_two_step_symmatry_end]],
[ :related [ :related :linear_two_step_symmatry_end]]."""
),
str(
"""@prefix : <http://example.org/ns#> .
:linear_two_step_symmetry_start :related [ :related [ :related :linear_two_step_symmatry_end]],
[ :related [ :related :linear_two_step_symmatry_end]]."""
),
True,
],
[
str(
"""@prefix : <http://example.org/ns#> .
_:a :rel [
:rel [
:rel [
:rel [
:rel _:a;
];
];
];
]."""
),
str(
"""@prefix : <http://example.org/ns#> .
_:a :rel [
:rel [
:rel [
:rel [
:rel [
:rel _:a;
];
];
];
];
]."""
),
False,
],
# This test fails because the algorithm purposefully breaks the symmetry of symetric
[
str(
"""@prefix : <http://example.org/ns#> .
_:a :rel [
:rel [
:rel [
:rel [
:rel _:a;
];
];
];
]."""
),
str(
"""@prefix : <http://example.org/ns#> .
_:a :rel [
:rel [
:rel [
:rel [
:rel _:a;
];
];
];
]."""
),
True,
],
[
str(
"""@prefix : <http://example.org/ns#> .
_:a :rel [
:rel [
:label "foo";
:rel [
:rel [
:rel _:a;
];
];
];
]."""
),
str(
"""@prefix : <http://example.org/ns#> .
_:a :rel [
:rel [
:rel [
:rel [
:rel _:a;
];
];
];
]."""
),
False,
],
[
str(
"""@prefix : <http://example.org/ns#> .
_:0001 :rel _:0003, _:0004.
_:0002 :rel _:0005, _:0006.
_:0003 :rel _:0001, _:0007, _:0010.
_:0004 :rel _:0001, _:0009, _:0008.
_:0005 :rel _:0002, _:0007, _:0009.
_:0006 :rel _:0002, _:0008, _:0010.
_:0007 :rel _:0003, _:0005, _:0009.
_:0008 :rel _:0004, _:0006, _:0010.
_:0009 :rel _:0004, _:0005, _:0007.
_:0010 :rel _:0003, _:0006, _:0008.
"""
),
str(
"""@prefix : <http://example.org/ns#> .
_:0001 :rel _:0003, _:0004.
_:0002 :rel _:0005, _:0006.
_:0003 :rel _:0001, _:0007, _:0010.
_:0008 :rel _:0004, _:0006, _:0010.
_:0009 :rel _:0004, _:0005, _:0007.
_:0010 :rel _:0003, _:0006, _:0008.
_:0004 :rel _:0001, _:0009, _:0008.
_:0005 :rel _:0002, _:0007, _:0009.
_:0006 :rel _:0002, _:0008, _:0010.
_:0007 :rel _:0003, _:0005, _:0009.
"""
),
True,
],
]
def fn(rdf1, rdf2, identical):
digest1 = get_digest_value(rdf1, "text/turtle")
digest2 = get_digest_value(rdf2, "text/turtle")
print(rdf1)
print(digest1)
print(rdf2)
print(digest2)
assert (digest1 == digest2) == identical
for inputs in testInputs:
yield fn, inputs[0], inputs[1], inputs[2]
@pytest.mark.parametrize("fn, rdf1, rdf2, identical", negative_graph_match_test())
def test_negative_graph_match(fn, rdf1, rdf2, identical):
fn(rdf1, rdf2, identical)
def test_issue494_collapsing_bnodes():
"""Test for https://github.com/RDFLib/rdflib/issues/494 collapsing BNodes"""
g = Graph()
g += [
(BNode("Na1a8fbcf755f41c1b5728f326be50994"), RDF["object"], URIRef("source")),
(BNode("Na1a8fbcf755f41c1b5728f326be50994"), RDF["predicate"], BNode("vcb3")),
(BNode("Na1a8fbcf755f41c1b5728f326be50994"), RDF["subject"], BNode("vcb2")),
(BNode("Na1a8fbcf755f41c1b5728f326be50994"), RDF["type"], RDF["Statement"]),
(BNode("Na713b02f320d409c806ff0190db324f4"), RDF["object"], URIRef("target")),
(BNode("Na713b02f320d409c806ff0190db324f4"), RDF["predicate"], BNode("vcb0")),
(BNode("Na713b02f320d409c806ff0190db324f4"), RDF["subject"], URIRef("source")),
(BNode("Na713b02f320d409c806ff0190db324f4"), RDF["type"], RDF["Statement"]),
(BNode("Ndb804ba690a64b3dbb9063c68d5e3550"), RDF["object"], BNode("vr0KcS4")),
(
BNode("Ndb804ba690a64b3dbb9063c68d5e3550"),
RDF["predicate"],
BNode("vrby3JV"),
),
(BNode("Ndb804ba690a64b3dbb9063c68d5e3550"), RDF["subject"], URIRef("source")),
(BNode("Ndb804ba690a64b3dbb9063c68d5e3550"), RDF["type"], RDF["Statement"]),
(BNode("Ndfc47fb1cd2d4382bcb8d5eb7835a636"), RDF["object"], URIRef("source")),
(BNode("Ndfc47fb1cd2d4382bcb8d5eb7835a636"), RDF["predicate"], BNode("vcb5")),
(BNode("Ndfc47fb1cd2d4382bcb8d5eb7835a636"), RDF["subject"], URIRef("target")),
(BNode("Ndfc47fb1cd2d4382bcb8d5eb7835a636"), RDF["type"], RDF["Statement"]),
(BNode("Nec6864ef180843838aa9805bac835c98"), RDF["object"], URIRef("source")),
(BNode("Nec6864ef180843838aa9805bac835c98"), RDF["predicate"], BNode("vcb4")),
(BNode("Nec6864ef180843838aa9805bac835c98"), RDF["subject"], URIRef("source")),
(BNode("Nec6864ef180843838aa9805bac835c98"), RDF["type"], RDF["Statement"]),
]
# print('graph length: %d, nodes: %d' % (len(g), len(g.all_nodes())))
# print('triple_bnode degrees:')
# for triple_bnode in g.subjects(RDF['type'], RDF['Statement']):
# print(len(list(g.triples([triple_bnode, None, None]))))
# print('all node degrees:')
g_node_degs = sorted(
[len(list(g.triples([node, None, None]))) for node in g.all_nodes()],
reverse=True,
)
# print(g_node_degs)
cg = to_canonical_graph(g)
# print('graph length: %d, nodes: %d' % (len(cg), len(cg.all_nodes())))
# print('triple_bnode degrees:')
# for triple_bnode in cg.subjects(RDF['type'], RDF['Statement']):
# print(len(list(cg.triples([triple_bnode, None, None]))))
# print('all node degrees:')
cg_node_degs = sorted(
[len(list(cg.triples([node, None, None]))) for node in cg.all_nodes()],
reverse=True,
)
# print(cg_node_degs)
assert len(g) == len(cg), "canonicalization changed number of triples in graph"
assert len(g.all_nodes()) == len(
cg.all_nodes()
), "canonicalization changed number of nodes in graph"
assert len(list(g.subjects(RDF["type"], RDF["Statement"]))) == len(
list(cg.subjects(RDF["type"], RDF["Statement"]))
), "canonicalization changed number of statements"
assert g_node_degs == cg_node_degs, "canonicalization changed node degrees"
# counter for subject, predicate and object nodes
g_pos_counts = Counter(), Counter(), Counter()
for t in g:
for i, node in enumerate(t):
g_pos_counts[i][t] += 1
g_count_signature = [sorted(c.values()) for c in g_pos_counts]
cg = to_canonical_graph(g)
cg_pos_counts = Counter(), Counter(), Counter()
for t in cg:
for i, node in enumerate(t):
cg_pos_counts[i][t] += 1
cg_count_signature = [sorted(c.values()) for c in cg_pos_counts]
assert (
g_count_signature == cg_count_signature
), "canonicalization changed node position counts"
def test_issue682_signing_named_graphs():
ns = Namespace("http://love.com#")
mary = BNode()
john = URIRef("http://love.com/lovers/john#")
cmary = URIRef("http://love.com/lovers/mary#")
cjohn = URIRef("http://love.com/lovers/john#")
store = Memory()
g = ConjunctiveGraph(store=store)
g.bind("love", ns)
gmary = Graph(store=store, identifier=cmary)
gmary.add((mary, ns["hasName"], Literal("Mary")))
gmary.add((mary, ns["loves"], john))
gjohn = Graph(store=store, identifier=cjohn)
gjohn.add((john, ns["hasName"], Literal("John")))
ig = to_isomorphic(g)
igmary = to_isomorphic(gmary)
assert len(igmary) == len(gmary)
assert len(ig) == len(g)
assert len(igmary) < len(ig)
assert ig.graph_digest() != igmary.graph_digest()
def test_issue725_collapsing_bnodes_2():
g = Graph()
g += [
(
BNode("N0a76d42406b84fe4b8029d0a7fa04244"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#object"),
BNode("v2"),
),
(
BNode("N0a76d42406b84fe4b8029d0a7fa04244"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate"),
BNode("v0"),
),
(
BNode("N0a76d42406b84fe4b8029d0a7fa04244"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#subject"),
URIRef("urn:gp_learner:fixed_var:target"),
),
(
BNode("N0a76d42406b84fe4b8029d0a7fa04244"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#type"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement"),
),
(
BNode("N2f62af5936b94a8eb4b1e4bfa8e11d95"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#object"),
BNode("v1"),
),
(
BNode("N2f62af5936b94a8eb4b1e4bfa8e11d95"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate"),
BNode("v0"),
),
(
BNode("N2f62af5936b94a8eb4b1e4bfa8e11d95"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#subject"),
URIRef("urn:gp_learner:fixed_var:target"),
),
(
BNode("N2f62af5936b94a8eb4b1e4bfa8e11d95"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#type"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement"),
),
(
BNode("N5ae541f93e1d4e5880450b1bdceb6404"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#object"),
BNode("v5"),
),
(
BNode("N5ae541f93e1d4e5880450b1bdceb6404"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate"),
BNode("v4"),
),
(
BNode("N5ae541f93e1d4e5880450b1bdceb6404"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#subject"),
URIRef("urn:gp_learner:fixed_var:target"),
),
(
BNode("N5ae541f93e1d4e5880450b1bdceb6404"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#type"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement"),
),
(
BNode("N86ac7ca781f546ae939b8963895f672e"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#object"),
URIRef("urn:gp_learner:fixed_var:source"),
),
(
BNode("N86ac7ca781f546ae939b8963895f672e"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate"),
BNode("v0"),
),
(
BNode("N86ac7ca781f546ae939b8963895f672e"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#subject"),
URIRef("urn:gp_learner:fixed_var:target"),
),
(
BNode("N86ac7ca781f546ae939b8963895f672e"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#type"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement"),
),
(
BNode("Nac82b883ca3849b5ab6820b7ac15e490"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#object"),
BNode("v1"),
),
(
BNode("Nac82b883ca3849b5ab6820b7ac15e490"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate"),
BNode("v3"),
),
(
BNode("Nac82b883ca3849b5ab6820b7ac15e490"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#subject"),
URIRef("urn:gp_learner:fixed_var:target"),
),
(
BNode("Nac82b883ca3849b5ab6820b7ac15e490"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#type"),
URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement"),
),
]
turtle = """
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
[] a rdf:Statement ;
rdf:object [ ] ;
rdf:predicate _:v0 ;
rdf:subject <urn:gp_learner:fixed_var:target> .
[] a rdf:Statement ;
rdf:object _:v1 ;
rdf:predicate _:v0 ;
rdf:subject <urn:gp_learner:fixed_var:target> .
[] a rdf:Statement ;
rdf:object [ ] ;
rdf:predicate [ ] ;
rdf:subject <urn:gp_learner:fixed_var:target> .
[] a rdf:Statement ;
rdf:object <urn:gp_learner:fixed_var:source> ;
rdf:predicate _:v0 ;
rdf:subject <urn:gp_learner:fixed_var:target> .
[] a rdf:Statement ;
rdf:object _:v1 ;
rdf:predicate [ ] ;
rdf:subject <urn:gp_learner:fixed_var:target> ."""
# g = Graph()
# g.parse(data=turtle, format='turtle')
stats = {}
cg = rdflib.compare.to_canonical_graph(g, stats=stats)
# print ('graph g length: %d, nodes: %d' % (len(g), len(g.all_nodes())))
# print ('triple_bnode degrees:')
# for triple_bnode in g.subjects(rdflib.RDF['type'], rdflib.RDF['Statement']):
# print (len(list(g.triples([triple_bnode, None, None]))))
# print ('all node out-degrees:')
# print (sorted(
# [len(list(g.triples([node, None, None]))) for node in g.all_nodes()]))
# print ('all node in-degrees:')
# print (sorted(
# [len(list(g.triples([None, None, node]))) for node in g.all_nodes()]))
# print(g.serialize(format='n3'))
#
# print ('graph cg length: %d, nodes: %d' % (len(cg), len(cg.all_nodes())))
# print ('triple_bnode degrees:')
# for triple_bnode in cg.subjects(rdflib.RDF['type'],
# rdflib.RDF['Statement']):
# print (len(list(cg.triples([triple_bnode, None, None]))))
# print ('all node out-degrees:')
# print (sorted(
# [len(list(cg.triples([node, None, None]))) for node in cg.all_nodes()]))
# print ('all node in-degrees:')
# print (sorted(
# [len(list(cg.triples([None, None, node]))) for node in cg.all_nodes()]))
# print(cg.serialize(format='n3'))
assert len(g.all_nodes()) == len(cg.all_nodes())
cg = to_canonical_graph(g)
assert len(g) == len(cg), "canonicalization changed number of triples in graph"
assert len(g.all_nodes()) == len(
cg.all_nodes()
), "canonicalization changed number of nodes in graph"
assert len(list(g.subjects(RDF["type"], RDF["Statement"]))) == len(
list(cg.subjects(RDF["type"], RDF["Statement"]))
), "canonicalization changed number of statements"
# counter for subject, predicate and object nodes
g_pos_counts = Counter(), Counter(), Counter()
for t in g:
for i, node in enumerate(t):
g_pos_counts[i][t] += 1
g_count_signature = [sorted(c.values()) for c in g_pos_counts]
cg_pos_counts = Counter(), Counter(), Counter()
for t in cg:
for i, node in enumerate(t):
cg_pos_counts[i][t] += 1
cg_count_signature = [sorted(c.values()) for c in cg_pos_counts]
assert (
g_count_signature == cg_count_signature
), "canonicalization changed node position counts"
_Triple = Tuple[Node, Node, Node]
_TripleSet = Set[_Triple]
class TestConsistency(unittest.TestCase):
@expectedFailure
def test_consistent_ids(self) -> None:
"""
This test verifies that `to_canonical_graph` creates consistent
identifiers for blank nodes even when the graph changes.
It does this by creating two triple sets `g0_ts` and `g1_ts`
and then first creating a canonical graph with only the first
triple set (cg0), and then a canonical graph with both triple
sets (cg1), and then confirming the triples in cg0 is a subset
of cg1.
This will fail if the `to_canonical_graph` does not generate
consistent identifiers for blank nodes when the graph changes.
This property is essential for `to_canonical_graph` to
be useful for diffing graphs.
"""
bnode = BNode()
g0_ts: _TripleSet = {
(bnode, FOAF.name, Literal("Golan Trevize")),
(bnode, RDF.type, FOAF.Person),
}
bnode = BNode()
g1_ts: _TripleSet = {
(bnode, FOAF.name, Literal("Janov Pelorat")),
(bnode, RDF.type, FOAF.Person),
}
g0 = Graph()
g0 += g0_ts
cg0 = to_canonical_graph(g0)
cg0_ts = GraphHelper.triple_set(cg0)
g1 = Graph()
g1 += g1_ts
cg1 = to_canonical_graph(g1)
cg1_ts = GraphHelper.triple_set(cg1)
assert cg0_ts.issubset(
cg1_ts
), "canonical triple set cg0_ts should be a subset of canonical triple set cg1_ts"
if __name__ == "__main__":
unittest.main()
|
