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from __future__ import annotations
import enum
import itertools
import logging
import re
import socket
from contextlib import ExitStack
from dataclasses import dataclass, field
from functools import lru_cache
from pathlib import Path, PosixPath, PurePath
from typing import (
IO,
Callable,
Dict,
Generator,
List,
Optional,
Set,
TextIO,
Tuple,
Union,
cast,
)
from urllib.parse import urlsplit, urlunsplit
import pytest
from _pytest.mark.structures import Mark, MarkDecorator, ParameterSet
import rdflib
import rdflib.plugin
from rdflib import RDF, XSD, Graph, Literal, Namespace, URIRef
from rdflib.graph import DATASET_DEFAULT_GRAPH_ID, Dataset
from rdflib.serializer import Serializer
from test.utils import GraphHelper, get_unique_plugins
from test.utils.destination import DestinationType, DestParmType, DestRef
from test.utils.namespace import EGDC, EGSCHEME, EGURN
@pytest.mark.parametrize(
"format, tuple_index, is_keyword",
[
(format, tuple_index, keyword)
for format, (tuple_index, keyword) in itertools.product(
["turtle", "n3", "trig"],
[
(0, False),
(1, True),
(2, False),
],
)
]
+ [("trig", 3, False)],
)
def test_rdf_type(format: str, tuple_index: int, is_keyword: bool) -> None:
NS = Namespace("example:") # noqa: N806
graph = Dataset(default_union=True)
graph.bind("eg", NS)
nodes = [NS.subj, NS.pred, NS.obj, NS.graph]
nodes[tuple_index] = RDF.type
quad = cast(Tuple[URIRef, URIRef, URIRef, URIRef], tuple(nodes))
# type error: Argument 1 to "add" of "ConjunctiveGraph" has incompatible type "Tuple[URIRef, URIRef, URIRef, URIRef]"; expected "Union[Tuple[Node, Node, Node], Tuple[Node, Node, Node, Optional[Graph]]]"
graph.add(quad) # type: ignore[arg-type]
data = graph.serialize(format=format)
logging.info("data = %s", data)
assert NS in data
if is_keyword:
assert str(RDF) not in data
else:
assert str(RDF) in data
parsed_graph = Dataset(default_union=True)
parsed_graph.parse(data=data, format=format)
GraphHelper.assert_triple_sets_equals(graph, parsed_graph)
EG = Namespace("example:")
@pytest.fixture(scope="session")
def simple_graph() -> Graph:
"""
This is a simple graph with no BNodes that can be used in tests.
Assumptions/assertions should not be made about the triples in it, other
than that it contains no blank nodes.
"""
graph = Graph()
graph.add((EGSCHEME.subject, EGSCHEME.predicate, EGSCHEME.object))
graph.add((EGSCHEME.subject, EGSCHEME.predicate, Literal(12)))
graph.add(
(
EGDC.subject,
EGDC.predicate,
Literal("日本語の表記体系", lang="jpx"),
)
)
graph.add((EGURN.subject, EGSCHEME.predicate, EGSCHEME.subject))
graph.add(
(EGSCHEME.object, EGDC.predicate, Literal("XSD string", datatype=XSD.string))
)
return graph
@pytest.fixture(scope="session")
def simple_dataset() -> Dataset:
"""
This is a simple dataset with no BNodes that can be used in tests.
Assumptions/assertions should not be made about the quads in it, other
than that it contains no blank nodes.
"""
graph = Dataset()
graph.default_context.add((EGSCHEME.subject, EGSCHEME.predicate, EGSCHEME.object))
graph.default_context.add((EGURN.subject, EGURN.predicate, EGURN.object))
graph.default_context.add((EGDC.subject, EGDC.predicate, Literal("typeless")))
graph.get_context(EGSCHEME.graph).add(
(EGSCHEME.subject, EGSCHEME.predicate, EGSCHEME.object)
)
graph.get_context(EGSCHEME.graph).add(
(EGSCHEME.subject, EGSCHEME.predicate, Literal(12))
)
graph.get_context(EGSCHEME.graph).add(
(
EGDC.subject,
EGDC.predicate,
Literal("日本語の表記体系", lang="jpx"),
)
)
graph.get_context(EGSCHEME.graph).add(
(EGURN.subject, EGSCHEME.predicate, EGSCHEME.subject)
)
graph.get_context(EGURN.graph).add(
(EGSCHEME.subject, EGSCHEME.predicate, EGSCHEME.object)
)
graph.get_context(EGURN.graph).add((EGSCHEME.subject, EGDC.predicate, EGDC.object))
graph.get_context(EGURN.graph).add(
(EGSCHEME.subject, EGDC.predicate, Literal("XSD string", datatype=XSD.string))
)
return graph
def test_serialize_to_purepath(tmp_path: Path, simple_graph: Graph):
tfpath = tmp_path / "out.nt"
simple_graph.serialize(destination=tfpath, format="nt", encoding="utf-8")
graph_check = Graph()
graph_check.parse(source=tfpath, format="nt")
GraphHelper.assert_triple_sets_equals(simple_graph, graph_check)
def test_serialize_to_path(tmp_path: Path, simple_graph: Graph):
tfpath = tmp_path / "out.nt"
simple_graph.serialize(destination=tfpath, format="nt", encoding="utf-8")
graph_check = Graph()
graph_check.parse(source=tfpath, format="nt")
GraphHelper.assert_triple_sets_equals(simple_graph, graph_check)
def test_serialize_to_neturl(simple_graph: Graph):
with pytest.raises(Exception) as raised:
simple_graph.serialize(
destination="http://example.com/", format="nt", encoding="utf-8"
)
assert isinstance(
raised.value,
(
FileNotFoundError, # This is for Posix
OSError, # This is for Windows
),
)
def test_serialize_to_fileurl(tmp_path: Path, simple_graph: Graph):
tfpath = tmp_path / "out.nt"
tfurl = tfpath.as_uri()
assert re.match(r"^file:", tfurl)
assert not tfpath.exists()
simple_graph.serialize(destination=tfurl, format="nt", encoding="utf-8")
assert tfpath.exists()
graph_check = Graph()
graph_check.parse(source=tfpath, format="nt")
GraphHelper.assert_triple_sets_equals(simple_graph, graph_check)
def test_serialize_badformat(simple_graph: Graph) -> None:
# NOTE: This is using an fully qualified name because of reloading that
# occurs in `test_plugins.py` which results in the the type identity being
# different.
with pytest.raises(rdflib.plugin.PluginException) as ctx:
simple_graph.serialize(destination="http://example.com/", format="badformat")
assert "badformat" in f"{ctx.value}"
DESTINATION_TYPES = {
DestinationType.RETURN,
DestinationType.PATH,
DestinationType.PURE_PATH,
DestinationType.STR_PATH,
DestinationType.FILE_URI,
DestinationType.BINARY_IO,
}
GraphDestParamType = Union[Path, PurePath, str, IO[bytes]]
def narrow_dest_param(param: DestParmType) -> GraphDestParamType:
assert not (hasattr(param, "write") and hasattr(param, "encoding"))
assert not isinstance(param, TextIO)
return param
class GraphType(str, enum.Enum):
QUAD = enum.auto()
TRIPLE = enum.auto()
class GraphFormat(str, enum.Enum):
TRIG = "trig"
NQUADS = "nquads"
TRIX = "trix"
JSON_LD = "json-ld"
TURTLE = "turtle"
NT11 = "nt11"
XML = "xml"
N3 = "n3"
NTRIPLES = "ntriples"
HEXT = "hext"
@classmethod
@lru_cache(maxsize=None)
def info_dict(cls) -> GraphFormatInfoDict:
return GraphFormatInfoDict.make(
GraphFormatInfo(
GraphFormat.TRIG,
graph_types={GraphType.TRIPLE, GraphType.QUAD},
encodings={"utf-8"},
),
GraphFormatInfo(
GraphFormat.NQUADS,
# TODO FIXME: Currently nquads rejects requests to seralize
# non-context-aware stores, this does not make a lot of sense and
# should be fixed.
#
graph_types={GraphType.QUAD},
encodings={"utf-8"},
),
GraphFormatInfo(
GraphFormat.TRIX,
# TODO FIXME: Currently trix rejects requests to seralize
# non-context-aware stores, this does not make a lot of sense and
# should be fixed.
#
graph_types={GraphType.QUAD},
encodings={"utf-8"},
),
GraphFormatInfo(
GraphFormat.JSON_LD,
graph_types={GraphType.TRIPLE, GraphType.QUAD},
encodings={"utf-8"},
),
GraphFormatInfo(
GraphFormat.TURTLE,
graph_types={GraphType.TRIPLE},
encodings={"utf-8"},
serializer_list=["longturtle", "turtle"],
),
GraphFormatInfo(
GraphFormat.NT11,
graph_types={GraphType.TRIPLE},
encodings={"utf-8"},
),
GraphFormatInfo(
GraphFormat.XML,
graph_types={GraphType.TRIPLE},
encodings={"utf-8"},
serializer_list=["xml", "pretty-xml"],
),
GraphFormatInfo(
GraphFormat.N3,
graph_types={GraphType.TRIPLE},
encodings={"utf-8"},
),
GraphFormatInfo(
GraphFormat.NTRIPLES,
graph_types={GraphType.TRIPLE},
encodings={"utf-8"},
),
GraphFormatInfo(
GraphFormat.HEXT,
graph_types={GraphType.TRIPLE, GraphType.QUAD},
encodings={"utf-8"},
),
)
@property
def info(self) -> GraphFormatInfo:
return self.info_dict()[self]
@classmethod
@lru_cache(maxsize=None)
def set(cls) -> Set[GraphFormat]:
return set(*cls)
@dataclass
class GraphFormatInfo:
name: GraphFormat
graph_types: Set[GraphType]
encodings: Set[str]
serializer_list: Optional[List[str]] = field(
default=None, repr=False, hash=False, compare=False
)
deserializer_list: Optional[List[str]] = field(
default=None, repr=False, hash=False, compare=False
)
serializers: List[str] = field(default_factory=list, init=False)
deserializers: List[str] = field(default_factory=list, init=False)
def __post_init__(self) -> None:
self.serializers = (
[self.name.value] if self.serializer_list is None else self.serializer_list
)
self.deserializers = (
[self.name.value]
if self.deserializer_list is None
else self.deserializer_list
)
@property
def serializer(self) -> str:
if not self.serializers:
raise RuntimeError("no serializers for {self.name}")
return self.serializers[0]
@property
def deserializer(self) -> str:
if not self.deserializers:
raise RuntimeError("no deserializer for {self.name}")
return self.deserializer[0]
class GraphFormatInfoDict(Dict[str, GraphFormatInfo]):
@classmethod
def make(cls, *graph_format: GraphFormatInfo) -> GraphFormatInfoDict:
result = cls()
for item in graph_format:
result[item.name] = item
return result
def serdes_dict(self) -> Tuple[Dict[str, GraphFormat], Dict[str, GraphFormat]]:
serializer_dict: Dict[str, GraphFormat] = {}
deserializer_dict: Dict[str, GraphFormat] = {}
for format in self.values():
for serializer in format.serializers:
serializer_dict[serializer] = format.name
for deserializer in format.deserializers:
deserializer_dict[deserializer] = format.name
return (serializer_dict, deserializer_dict)
serializer_dict, deserializer_dict = GraphFormat.info_dict().serdes_dict()
def test_all_serializers_specified() -> None:
plugins = get_unique_plugins(Serializer)
for plugin_refs in plugins.values():
names = {plugin_ref.name for plugin_ref in plugin_refs}
assert (
set(serializer_dict.keys()) != set()
), f"serializers does not include any of {names}"
def make_serialize_parse_tests() -> Generator[ParameterSet, None, None]:
"""
This function generates test parameters for test_serialize_parse.
"""
xfails: Dict[
Tuple[str, GraphType, DestinationType, Optional[str]],
Union[MarkDecorator, Mark],
] = {}
for serializer_name, destination_type in itertools.product(
serializer_dict.keys(), DESTINATION_TYPES
):
format = serializer_dict[serializer_name]
encodings: Set[Optional[str]] = {*format.info.encodings, None}
for encoding, graph_type in itertools.product(
encodings, format.info.graph_types
):
xfail = xfails.get(
(serializer_name, graph_type, destination_type, encoding)
)
if not xfail:
if serializer_name in ("trig") and graph_type is GraphType.TRIPLE:
xfail = pytest.mark.xfail(
raises=AssertionError,
reason="""
TriG serializes non-context aware stores incorrectly, adding a blank
node graph name which breaks round tripping.
""",
)
if serializer_name in ("json-ld"):
xfail = pytest.mark.xfail(
raises=AssertionError,
reason="""
JSON-LD is dropping datatype:
- rdflib.term.Literal('XSD string'),
+ rdflib.term.Literal('XSD string', datatype=rdflib.term.URIRef('http://www.w3.org/2001/XMLSchema#string')),
""",
)
elif serializer_name in ("hext") and graph_type is GraphType.QUAD:
xfail = pytest.mark.xfail(
raises=AssertionError,
reason="""
hext is injecting datatype:
- rdflib.term.Literal('typeless', datatype=rdflib.term.URIRef('http://www.w3.org/2001/XMLSchema#string')),
+ rdflib.term.Literal('typeless'),
""",
)
marks = (xfail,) if xfail is not None else ()
yield pytest.param(
(serializer_name, graph_type, destination_type, encoding),
id=f"{serializer_name}-{graph_type.name}-{destination_type.name}-{encoding}",
marks=marks,
)
SerializeResultType = Union[bytes, str, Graph]
@pytest.mark.parametrize(
["args"],
make_serialize_parse_tests(),
)
def test_serialize_parse(
tmp_path: Path,
simple_graph: Graph,
simple_dataset: Dataset,
args: Tuple[str, GraphType, DestinationType, Optional[str]],
) -> None:
"""
Serialization works correctly with the given arguments and generates output
that can be parsed to a graph that is identical to the original graph.
"""
serializer_name, graph_type, destination_type, encoding = args
format = serializer_dict[serializer_name]
graph: Union[Graph, Dataset]
if graph_type == GraphType.QUAD:
graph = simple_dataset
elif graph_type == GraphType.TRIPLE:
graph = simple_graph
else:
raise ValueError(f"graph_type {graph_type!r} is not supported")
with destination_type.make_ref(tmp_path) as dest_ref:
destination = None if dest_ref is None else narrow_dest_param(dest_ref.param)
serialize_result = graph.serialize(
destination=destination,
format=serializer_name,
encoding=encoding,
)
logging.debug("serialize_result = %r, dest_ref = %s", serialize_result, dest_ref)
if dest_ref is None:
if encoding is None:
assert isinstance(serialize_result, str)
serialized_data = serialize_result
else:
assert isinstance(serialize_result, bytes)
serialized_data = serialize_result.decode(encoding)
else:
assert isinstance(serialize_result, Graph)
assert dest_ref.path.exists()
serialized_data = dest_ref.path.read_bytes().decode(
"utf-8" if encoding is None else encoding
)
logging.debug("serialized_data = %s", serialized_data)
check_serialized(format, graph, serialized_data)
def check_serialized(format: GraphFormat, graph: Graph, data: str) -> None:
graph_check = Dataset() if isinstance(graph, Dataset) else Graph()
if not format.info.deserializers:
return
graph_check.parse(
data=data,
format=format.info.deserializers[0],
publicID=DATASET_DEFAULT_GRAPH_ID,
)
logging.debug("graph = %r, graph_check = %r", graph, graph_check)
GraphHelper.assert_sets_equals(graph, graph_check)
@dataclass
class SerializeArgs:
format: str
opt_dest_ref: Optional[DestRef]
@property
def dest_ref(self) -> DestRef:
if self.opt_dest_ref is None:
raise RuntimeError("dest_ref is None")
return self.opt_dest_ref
@property
def dest_param(self) -> GraphDestParamType:
if self.opt_dest_ref is None:
raise RuntimeError("dest_ref is None")
return narrow_dest_param(self.opt_dest_ref.param)
SerializeFunctionType = Callable[[Graph, SerializeArgs], SerializeResultType]
StrSerializeFunctionType = Callable[[Graph, SerializeArgs], str]
BytesSerializeFunctionType = Callable[[Graph, SerializeArgs], bytes]
FileSerializeFunctionType = Callable[[Graph, SerializeArgs], Graph]
str_serialize_functions: List[StrSerializeFunctionType] = [
lambda graph, args: graph.serialize(),
lambda graph, args: graph.serialize(None),
lambda graph, args: graph.serialize(None, args.format),
lambda graph, args: graph.serialize(None, args.format, encoding=None),
lambda graph, args: graph.serialize(None, args.format, None, None),
lambda graph, args: graph.serialize(None, format=args.format),
lambda graph, args: graph.serialize(None, format=args.format, encoding=None),
]
bytes_serialize_functions: List[BytesSerializeFunctionType] = [
lambda graph, args: graph.serialize(encoding="utf-8"),
lambda graph, args: graph.serialize(None, args.format, encoding="utf-8"),
lambda graph, args: graph.serialize(None, args.format, None, "utf-8"),
lambda graph, args: graph.serialize(None, args.format, None, encoding="utf-8"),
lambda graph, args: graph.serialize(None, args.format, encoding="utf-8"),
lambda graph, args: graph.serialize(None, format=args.format, encoding="utf-8"),
]
file_serialize_functions: List[FileSerializeFunctionType] = [
lambda graph, args: graph.serialize(args.dest_param),
lambda graph, args: graph.serialize(args.dest_param, encoding=None),
lambda graph, args: graph.serialize(args.dest_param, encoding="utf-8"),
lambda graph, args: graph.serialize(args.dest_param, args.format),
lambda graph, args: graph.serialize(args.dest_param, args.format, encoding=None),
lambda graph, args: graph.serialize(args.dest_param, args.format, None, None),
lambda graph, args: graph.serialize(args.dest_param, args.format, encoding="utf-8"),
lambda graph, args: graph.serialize(
args.dest_param, args.format, None, encoding="utf-8"
),
lambda graph, args: graph.serialize(args.dest_param, args.format, None, "utf-8"),
]
@pytest.mark.parametrize(
["destination_type", "serialize_function"],
[
*[
(DestinationType.RETURN, str_serialize_function)
for str_serialize_function in str_serialize_functions
],
*[
(DestinationType.RETURN, bytes_serialize_function)
for bytes_serialize_function in bytes_serialize_functions
],
*itertools.product(
{
DestinationType.BINARY_IO,
DestinationType.PATH,
DestinationType.PURE_PATH,
DestinationType.STR_PATH,
},
file_serialize_functions,
),
],
)
def test_serialize_overloads(
tmp_path: Path,
simple_graph: Graph,
destination_type: DestinationType,
serialize_function: SerializeFunctionType,
) -> None:
format = GraphFormat.TURTLE
with destination_type.make_ref(tmp_path) as dest_ref:
serialize_result = serialize_function(
simple_graph, SerializeArgs(format, dest_ref)
)
if isinstance(serialize_result, str):
serialized_data = serialize_result
elif isinstance(serialize_result, bytes):
serialized_data = serialize_result.decode("utf-8")
else:
assert isinstance(serialize_result, Graph)
assert dest_ref is not None
assert dest_ref.path.exists()
serialized_data = dest_ref.path.read_text(encoding="utf-8")
check_serialized(format, simple_graph, serialized_data)
def make_test_serialize_to_strdest_tests() -> Generator[ParameterSet, None, None]:
destination_types: Set[DestinationType] = {
DestinationType.FILE_URI,
DestinationType.STR_PATH,
}
name_prefixes = [
r"a_b-",
r"a%b-",
r"a%20b-",
r"a b-",
r"a b-",
r"a@b",
r"a$b",
r"a!b",
]
if isinstance(Path.cwd(), PosixPath):
# not valid on windows https://docs.microsoft.com/en-us/windows/win32/fileio/naming-a-file#naming-conventions
name_prefixes.extend(
[
r"a:b-",
r"a|b",
]
)
for destination_type, name_prefix in itertools.product(
destination_types, name_prefixes
):
yield pytest.param(
destination_type,
name_prefix,
id=f"{destination_type.name}-{name_prefix}",
)
@pytest.mark.parametrize(
["destination_type", "name_prefix"],
make_test_serialize_to_strdest_tests(),
)
def test_serialize_to_strdest(
tmp_path: Path,
simple_graph: Graph,
destination_type: DestinationType,
name_prefix: str,
) -> None:
"""
Serialization works correctly with the given arguments and generates output
that can be parsed to a graph that is identical to the original graph.
"""
format = GraphFormat.TURTLE
encoding = "utf-8"
def path_factory(
tmp_path: Path, type: DestinationType, encoding: Optional[str]
) -> Path:
return tmp_path / f"{name_prefix}file-{type.name}-{encoding}"
with destination_type.make_ref(
tmp_path,
encoding=encoding,
path_factory=path_factory,
) as dest_ref:
assert dest_ref is not None
destination = narrow_dest_param(dest_ref.param)
serialize_result = simple_graph.serialize(
destination=destination,
format=format.info.serializer,
encoding=encoding,
)
logging.debug("serialize_result = %r, dest_ref = %s", serialize_result, dest_ref)
assert isinstance(serialize_result, Graph)
assert dest_ref.path.exists()
serialized_data = dest_ref.path.read_bytes().decode(
"utf-8" if encoding is None else encoding
)
logging.debug("serialized_data = %s", serialized_data)
check_serialized(format, simple_graph, serialized_data)
@pytest.mark.parametrize(
["authority"],
[
("localhost",),
("127.0.0.1",),
("example.com",),
(socket.gethostname(),),
(socket.getfqdn(),),
],
)
def test_serialize_to_fileuri_with_authortiy(
tmp_path: Path,
simple_graph: Graph,
authority: str,
) -> None:
"""
Serializing to a file URI with authority raises an error.
"""
destination_type = DestinationType.FILE_URI
format = GraphFormat.TURTLE
with ExitStack() as exit_stack:
dest_ref = exit_stack.enter_context(
destination_type.make_ref(
tmp_path,
)
)
assert dest_ref is not None
assert isinstance(dest_ref.param, str)
urlparts = urlsplit(dest_ref.param)._replace(netloc=authority)
use_url = urlunsplit(urlparts)
logging.debug("use_url = %s", use_url)
catcher = exit_stack.enter_context(pytest.raises(ValueError))
simple_graph.serialize(
destination=use_url,
format=format.info.serializer,
)
assert False # this should never happen as serialize should always fail
# type error, mypy thinks this line is unreachable, but it works fine
assert catcher.value is not None # type: ignore[unreachable, unused-ignore]
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