File: Standardize.py

package info (click to toggle)
rdkit 201203-3
  • links: PTS, VCS
  • area: main
  • in suites: wheezy
  • size: 37,840 kB
  • sloc: cpp: 93,902; python: 51,897; java: 5,192; ansic: 3,497; xml: 2,499; sql: 1,641; yacc: 1,518; lex: 1,076; makefile: 325; fortran: 183; sh: 153; cs: 51
file content (29 lines) | stat: -rwxr-xr-x 730 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
# $Id: Standardize.py 1528 2010-09-26 17:04:37Z glandrum $
#
# Copyright (C) 2001-2008  greg Landrum
#
#   @@ All Rights Reserved @@
#  This file is part of the RDKit.
#  The contents are covered by the terms of the BSD license
#  which is included in the file license.txt, found at the root
#  of the RDKit source tree.
#
""" contains code for standardization of data matrices for clustering


"""
from rdkit.ML.Data import Stats

def StdDev(mat):
  """ the standard deviation classifier

   This uses _ML.Data.Stats.StandardizeMatrix()_ to do the work
   
  """
  return Stats.StandardizeMatrix(mat)
    
methods = [
  ("None",lambda x:x,"No Standardization"),
  ("Standard Deviation",StdDev,"Use the standard deviation"),
  ]