File: funcGroups.txt

package info (click to toggle)
rdkit 201403-1
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 62,288 kB
  • ctags: 15,156
  • sloc: cpp: 125,376; python: 55,674; java: 4,831; ansic: 4,178; xml: 2,499; sql: 1,775; yacc: 1,551; lex: 1,051; makefile: 353; fortran: 183; sh: 148; cs: 93
file content (28 lines) | stat: -rwxr-xr-x 899 bytes parent folder | download | duplicates (10)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
// Copyright (C) 2003 Rational Discovery LLC
// NOTE: larger functional groups should come before smaller ones involving the 
//  the first atom in the SMARTS query is not part of the group itself
//   Code	SMARTS	Notes
//--------------------------------------------------
// O containing
-C(=O)O	*-C(=O)[O;H1,-]	carboxylic acids
-O	*-[O;H1,-]	alcohols
=O	*=O	aldehydes
//--------------------------------------------------
//         Nitrogen containing
-N(=O)O	   *-[N;D3](=O)O	nitro
-N=O	   *-N=[O;X1]	nitroso
-N-O	   *-N=[O;X1]	nitroso
=N-O	   *=N-[O;H1,-]	oximes
=NC	   *=N-[C;D1]	Imines
-N=C	   *N=[C;D1]	Imines
-N	   *-[N;H2,H1&-1,-2]	amines
=N	   *=[N;H,-1]	???
#N	   *#[N;X1]	nitriles

//--------------------------------------------------
//       S containing
-S	 *-[S;H1,-]	thiols
=S	 *=S		thiocarbonyls

//--------------------------------------------------
-X	*-[#9,#17,#35,#53]	halogens