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# adapted from http://conda.pydata.org/docs/travis.html
language: generic
# build matrices
matrix:
include:
- os: linux
dist: trusty
env: CONDA_PYTHON_VERSION=2.7
- os: linux
dist: trusty
env: CONDA_PYTHON_VERSION=3.6
- os: osx
osx_image: xcode8.3
env: CONDA_PYTHON_VERSION=2.7
- os: osx
osx_image: xcode8.3
env: CONDA_PYTHON_VERSION=3.6
addons:
apt:
sources:
- ubuntu-toolchain-r-test
- llvm-toolchain-trusty-3.9
packages:
- build-essential
- openjdk-7-jdk
- swig
- libjpeg-dev
- clang-3.9
- libc++-dev
before_install:
# download and install miniconda
- echo "*************************************************"
- echo "Building for $TRAVIS_OS_NAME"
- echo " for Python $CONDA_PYTHON_VERSION"
- export PYMAJOR="";
- if [[ "$CONDA_PYTHON_VERSION" == "3.6" ]] ; then export PYMAJOR="3"; fi
- if [[ "$CONDA_PYTHON_VERSION" == "2.7" ]] ; then export PYMAJOR="2"; fi
- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then wget http://repo.continuum.io/miniconda/Miniconda$PYMAJOR-4.4.10-Linux-x86_64.sh -O miniconda.sh; fi
- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then wget http://repo.continuum.io/miniconda/Miniconda$PYMAJOR-4.4.10-MacOSX-x86_64.sh -O miniconda.sh; fi
- bash miniconda.sh -b -p $HOME/conda
- export PATH="$HOME/conda/bin:$PATH"
- hash -r
- conda config --set always_yes yes --set changeps1 no
- conda update -q conda
# Useful for debugging any issues with conda
- conda info -a
install:
- echo "INSTALL CONDA"
# (don't install conda compiler tools on linux -- this is gcc 4.8 right now)
#- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then conda install gcc_linux-64 gcc_linux-64 ; fi
- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then conda install -q -c rdkit boost=1.63; fi
- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then conda install -q py-boost=1.65.1 libboost=1.65.1 ; fi
- conda install -q numpy pillow pandas cmake eigen # matplotlib
before_script:
# RDKit
- echo "BEFORE SCRIPT"
- export RDBASE=`pwd`
- echo $RDBASE
- export PYTHONPATH=${RDBASE}
- export LD_LIBRARY_PATH=${RDBASE}/lib
- export DYLD_FALLBACK_LIBRARY_PATH=${RDBASE}/lib
- export PYTHON=`which python`
- echo $PYTHON
- export PY_PREFIX=`$PYTHON -c "import sys; print(sys.prefix)"`
- echo $PY_PREFIX
- export PY_SP_DIR=$PY_PREFIX/lib/python$CONDA_PYTHON_VERSION/site-packages
- echo $PY_SP_DIR
script:
- echo "SCRIPT"
- cd $RDBASE
- mkdir build
- cd build
- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then export CXX="clang++-3.9" ; fi
- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then export CC="clang-3.9" ; fi
- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then export REGEX_EXTRA="-DRDK_USE_BOOST_REGEX=ON" ; fi
- cmake $REGEX_EXTRA -D PYTHON_EXECUTABLE=$PYTHON -D BOOST_ROOT=$PY_PREFIX -D Boost_NO_SYSTEM_PATHS=ON -D RDK_BUILD_AVALON_SUPPORT=ON -D RDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_THREADSAFE_SSS=on -DRDK_TEST_MULTITHREADED=on -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_SWIG_WRAPPERS=OFF -DRDK_SWIG_STATIC=OFF -DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_BUILD_FREESASA_SUPPORT=ON ..
- make -j2 install
- ls "$PY_PREFIX/lib"
- LD_LIBRARY_PATH="$PY_PREFIX/lib:$PREFIX/lib;$SRC_DIR/lib;$LD_LIBRARY_PATH" ctest -j2 --output-on-failure
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